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Published March 30, 2020 | Version v0.5
Software Open

Bioinformatics data analysis and visualization toolkit

  • 1. Texas A&M AgriLife Research

Description

v0.5

v0.5 has the following updates and changes

  • Linear regression analysis added in analys.stat class
  • volcano, involcano, ma and heatmap functions moved to new visuz.gen_exp class
  • In volcano, parameters for new box type labeling and threshold grid lines added
  • corr_mat updated for new colormaps and moved to stat class
  • To visualize the graph in the console itself (e.g. Jupyter notebook), show parameter added
  • Pandas dataframe input added for volcano, involcano, corr_mat, ma, ttsam, and chisq
  • ttsam and chisq moved to analys.stat class
  • graph control parameters added for volcano, involcano, ma, and heatmap
  • documentation can also be accessed at https://reneshbedre.github.io/blog/howtoinstall.html
  • help will be deprecated in a future release
  • fixed the NumPy bug in visuz.stat.bardot. The int cast added to generate the number of samples, which does not accept float (See details of NumPy bug: https://github.com/numpy/numpy/issues/15345)

Files

reneshbedre/bioinfokit-v0.5.zip

Files (277.4 kB)

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