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JuliaStats/MixedModels.jl: v2.3.0

Douglas Bates; Phillip Alday; Dave Kleinschmidt; José Bayoán Santiago Calderón; Andreas Noack; Tony Kelman; Milan Bouchet-Valat; Yakir Luc Gagnon; Simon Babayan; Patrick Kofod Mogensen; Morten Piibeleht; Michael Hatherly; Elliot Saba; Antoine Baldassari

MixedModels v2.3.0

Diff since v2.2.0

Closed issues:

  • Variance and or correlation structures (#51)
  • Watch for boundary cases from fast=true in glmm fits (#95)
  • Comparing models (Equivalent to anova in R) (#182)
  • Set intercept to zero (#214)
  • Is it possible to put weights on clusters? (#221)
  • Nested model MethodError, Array{Float62, 2} vs SparseMatrixCSC{Float64,Int32}? (#232)
  • Constrain fixed effects and conditional modes of random effects (#235)
  • Variable ordering is wrong (#242)
  • Switch from Printf to Base.Ryu with 1.4.0 (#246)
  • Saving space in parametricbootstrap (#247)
  • Gaussian GLMMs with non identity link (#248)
  • OutOfMemory Error / Julia Crash for "simple" example (#252)
  • correlation of fixed-effects (#271)
  • MixedModels.likelihoodratiotest for glmer models (#278)
  • Cache dataset() result (#280)
  • Two Interactions Causing Error (#284)
  • Bug: Mixed Model crashes if dependent variable is constant (#292)

Merged pull requests:

  • Use 5-argument mul! instead of mulαβ! (#231) (@dmbates)
  • CompatHelper: bump compat for "Distributions" to "0.22" (#236) (@github-actions[bot])
  • Replace multiplications, etc. with small matrices by explicit loops (#237) (@dmbates)
  • Switch to Feather/Artifacts for test data (#238) (@dmbates)
  • Increase test coverage (#239) (@dmbates)
  • Switch bootstrap to return static vectors and a model copy (#240) (@dmbates)
  • Allow BlockArrays 0.11 by not calling nblocks (#241) (@dmbates)
  • threaded parametric bootstrap (#244) (@palday)
  • make zerocorr!(mod) mark the model as unfitted (#251) (@palday)
  • Improved handling of empty and rank-deficient fixed effects (#253) (@palday)
  • Add functions testdata and testdatasets (#254) (@dmbates)
  • fix up nesting (slash) syntax and add tests for fixefs too (#257) (@kleinschmidt)
  • Draft of using GH Actions (#258) (@Nosferican)
  • convert incoming parameters in simulate! and parametric bootstrap (#259) (@palday)
  • construct coeftable with hints for p-val and test-statistic cols (#260) (@palday)
  • update docs, fix copy-paste error for parametricbootstrap methods (#261) (@palday)
  • use a named tuple with coefnames for β in simulate (#262) (@kleinschmidt)
  • generic rankUpdate! method (#263) (@palday)
  • new rePCA: now on correlations and with optional extra info (#264) (@palday)
  • LikelihoodRatioTest struct and pretty-printing via coeftable (#265) (@palday)
  • update docs, fix copy-paste error for parametricbootstrap methods (#267) (@palday)
  • GLMM dispersion and dof_residual (#270) (@palday)
  • add docstring for MixedModel supertype that points to concrete terms (#272) (@kleinschmidt)
  • correlation of fixed effects (#274) (@palday)
  • fix value-preserving zerocorr! (#275) (@palday)
  • don't show unfitted GLMMs (#276) (@palday)
  • add corrmat function that generates full correlation matrix of ReMat (#277) (@kleinschmidt)
  • LRT for GLMMs (#279) (@palday)
  • Upgrade to version 1.0 of Tables (#281) (@dmbates)
  • Cache datasets (#282) (@dmbates)
  • Up Docs (#283) (@Nosferican)
  • Add stderror! method, distinguish coef and fixef (#287) (@dmbates)
  • Leanbootstrap (#288) (@dmbates)
  • CompatHelper: bump compat for "Distributions" to "0.23" (#295) (@github-actions[bot])
  • Leverage (#296) (@dmbates)
  • Replace Printf by Base.Ryu for Julia-1.4 (#298) (@dmbates)
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