UPDATE: Zenodo migration postponed to Oct 13 from 06:00-08:00 UTC. Read the announcement.

Conference paper Open Access

GPU Implementation of Neural-Network Simulations based on Adaptive-Exponential Models

Neofytou, Alexandros; Chatzikostantis, George; Magkanaris, Ioannis; Smaragdos, George; Strydis, Christos; Soudris, Dimitrios

Detailed brain modeling has been presenting significant challenges to the world of high-performance computing (HPC), posing computational problems that can benefit from modern hardware-acceleration technologies. We explore the capacity of GPUs for simulating large-scale neuronal networks based on the Adaptive Exponential neuron-model, which is widely used in the neuroscientific community. Our GPU-powered simulator acts as a benchmark to evaluate the strengths and limitations of modern GPUs, as well as to explore their scaling properties when simulating large neural networks. This work presents an optimized GPU implementation that outperforms a reference multicore implementation by 50x, whereas utilizing a dual-GPU configuration can deliver a speedup of 90x for networks of 20,000 fully interconnected AdEx neurons.

Files (629.9 kB)
Name Size
12_GPU_acceleration.pdf
md5:9b39c4c2d60cdb8cd4726ae4ca6ac177
629.9 kB Download
128
226
views
downloads
Views 128
Downloads 226
Data volume 142.4 MB
Unique views 117
Unique downloads 221

Share

Cite as