Dataset Open Access
The Pro(tein)/Gene corpus was developed at the JULIE Lab Jena under supervision of Prof. Udo Hahn.
The goals of the annotation project were
The corpus has the following annotation levels / entity types:
For definitions of the annotation levels, please refer to the Proteins-guidelines-final.doc file that is found in the download package.
To achieve a large coverage of biological subdomains, document from multiple other protein / gene corpora were reannotated. For further coverage, new document sets were created. All documents are abstracts from PubMed/MEDLINE. The corpus is made up of the union of all the documents in the different subcorpora.
All document are delivered as MMAX2 (http://mmax2.net/) annotation projects.
Faessler et al. (2020). PROGENE—A Large-scale, High-Quality Protein-Gene Annotated Benchmark Corpus, LREC 2020