Published March 13, 2019
| Version 1.0.0
Dataset
Open
Genotypes, variants and pedigree from a human parent-offspring trio (NA12878)
Authors/Creators
- 1. Centre National de Recherche en Génomique Humaine (CNRGH), Institut de Biologie François Jacob, CEA, Université Paris-Saclay, F-91057, Evry, France
Description
This dataset includes whole genome sequencing data, produced at the French National Research Center for Human Genomics (CNRGH), with known pedigree information:
- The VCF file contains genotypes and variants from a CEU parent-offspring trio comprising NA12878 (child), NA12891 (father) and NA12892 (mother).
For each member, 150-bp paired-end whole genome sequencing data were generated on the Illumina HiSeq X system, from a PCR-free library (40x).
- The TFAM file contains pedigree information of this CEU parent-offspring trio.
Notes
This dataset supports the following paper, so please use this citation to cite this dataset:
E. Larsonneur, J. Mercier, N. Wiart, E. Le Floch, O. Delhomme and V. Meyer, "Evaluating Workflow Management Systems: A Bioinformatics Use Case," 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Madrid, Spain, 2018, pp. 2773-2775.
doi: 10.1109/BIBM.2018.8621141
Source: https://dx.doi.org/10.1109/BIBM.2018.8621141
Files
Files
(435.0 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:291647280ece29272097a21a44afa565
|
20.8 kB | Download |
|
md5:275cd62d79179d598caa69f3f1758e05
|
94 Bytes | Download |
|
md5:8e6ff4927933c2198f440ea32bc3b7a0
|
69 Bytes | Download |
|
md5:8c32486ff4378c40d3c66c41bed45906
|
1.1 kB | Download |
|
md5:6f3c169f7652b7dbdc5431bfe56b8752
|
433.2 MB | Download |
|
md5:ae40e60cf2df0e226045aa7ed675832c
|
91 Bytes | Download |
|
md5:6822e6cb85eb801246d0318932ddb349
|
1.7 MB | Download |
|
md5:ccd2a690c826135bb5711e2b17733dd0
|
95 Bytes | Download |
Additional details
Related works
- Compiles
- 10.1109/BIBM.2018.8621141 (DOI)