gitter-lab/SINGE: Version 0.4.0

Changes in version 0.4.0 include:

• Support three modes of execution: MATLAB, compiled MATLAB executables with MATLAB runtime, or Docker
• The SINGE workflow has been split in GLG and Aggregate steps
• A wrapper script supports running the GLG and Aggregate steps individually or the entire workflow
• Increase robustness of hyperparameter parsing
• Add script to generate hyperparameter file
• Add usage guidelines
• Update Docker images are built on Travis CI
• Generalize Docker image to work outside the SINGE git repository
• Add default entrypoint to Docker image
• Test cases assert that the source code matches the compiled MATLAB executables
• All remaining instances of the old name SCINGE have been changed to SINGE
• Rename data1/tf.mat to data1/gene_list.mat and added data3 dataset