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Published January 7, 2020 | Version 1.0
Software Open

Singularity image: "covtobed" -- a tool to extract coverage information from BAM files [1.0RC]

  • 1. University of Turin
  • 2. Quadram Institute Bioscience

Description

Covtobed 1.0RC

Read one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

https://github.com/telatin/covtobed/

 

Latest version

Since our repository is used to automatically build a Docker container via DockerHub, you can pull the singularity image from there:

singularity pull docker://andreatelatin/covtobed

 

Files

Files (147.1 MB)

Name Size Download all
md5:b72839a4ccdab12d25eaad29c4dfac31
147.1 MB Download

Additional details

Funding

Determinants of microbe-host responses in the gut across life BBS/E/F/000PR10353
UK Research and Innovation