Published January 7, 2020
| Version 1.0
Software
Open
Singularity image: "covtobed" -- a tool to extract coverage information from BAM files [1.0RC]
Description
Covtobed 1.0RC
Read one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.
https://github.com/telatin/covtobed/
Latest version
Since our repository is used to automatically build a Docker container via DockerHub, you can pull the singularity image from there:
singularity pull docker://andreatelatin/covtobed
Files
Files
(147.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:b72839a4ccdab12d25eaad29c4dfac31
|
147.1 MB | Download |
Additional details
Funding
- Determinants of microbe-host responses in the gut across life BBS/E/F/000PR10353
- UK Research and Innovation