Published December 13, 2019
| Version v1
Dataset
Open
The effector secretome of the Irish potato famine pathogen Phytophthora infestans
Creators
- 1. University of Florida
- 2. The Sainsbury Laboratory
Description
Phytophthora infestans is the most destructive pathogen of potato and a model organism for the oomycetes. Haas et al. (2009) reported the sequence of the 240 megabases (Mb) genome of P. infestans. In this dataset we provide an annotated list of candidate effectors that we identified in the proteome of P. infestans T30-4 (Haas et al. 2009). We have frozen this list since 2015 and we reference all the effectors with “PITG_xxxxx” numbers from this list. The proteins can be cross-referenced to the GenBank sequences using these PITG_xxxxx numbers. The matching GenBank accession for the genome assembly is GCA_000142945.1. We also provide here the assembly and gtf files.
Reference:
Files
phytophthora_infestans_t30-4_1_supercontigs.fasta.zip
Files
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