Published July 22, 2025 | Version v1.5.1
Software Open

NBISweden/AGAT: AGAT v1.5.1

Creators

  • 1. IRD
  • 2. Data Intuitive
  • 3. Uppsala University
  • 4. Institut de Biochimie et Génétique Cellulaires
  • 5. Max Planck Institute for Biology Tübingen
  • 6. Oregon State University
  • 7. @VEuPathDB
  • 8. Centre for Genomic Regulation (CRG)

Description

  • fix #550 :
    • agat_sp_keep_longest_isoform was not updating level1 feature location (e.g.) after isoforms was removed.
    • agat_sp_statistics was providing surestimated values for gene calculation after isoform removed (the script do a calculation with and without isoform using same function as agat_sp_keep_longest_isoform).
  • replace use of check_gene_positions by check_level1_positions and remove check_gene_positions less generalized.
  • Update check_all_level1_locations and check_all_level2_locations. extrem_start is set to undef instead of a fake fixed value. Simplify check_all_level2_locations that was doing a useless extra test.
  • sync version released and version displayed ^^

Files

NBISweden/AGAT-v1.5.1.zip

Files (25.6 MB)

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md5:982be9cc683b5577a2dddb78e2936525
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Additional details

Related works

Is supplement to
Software: https://github.com/NBISweden/AGAT/tree/v1.5.1 (URL)

Software

Repository URL
https://github.com/NBISweden/AGAT