LOFAR SKSP Software Image

    This Singularity image contains an install of LOFAR ${LOFAR_VERSION}. In order to run your pipelines, you may need to know where the software is installed. The root directory is /opt/lofar, with all software installed as follows:

    * AOFlagger: $INSTALLDIR/aoflagger
    * Casacore: $INSTALLDIR/casacore
    * Dysco: $INSTALLDIR/dysco
    * LOFAR: $INSTALLDIR/lofar
    * LoSoTo: $INSTALLDIR/losoto
    * PyBDSF: $INSTALLDIR/pybdsf
    * RMextract: $INSTALLDIR/RMextract

    To execute a command, use
        singularity exec -B <paths,that,need,to,be,accessible> <path to image> <command> <arguments>
    for example:
        #singularity exec lofar.simg genericpipeline.py -d -c pipeline.cfg pipeline.parset
 

All packages located in /opt/lofar:

Available packages:

DPPP 4.1
LOFARBeam 2.8.12.2
RMextract 0.4
aoflagger 2.14.1 (2019-05-21)
armadillo 8.600.0
boost 1_6_30
casacore 2.2.1
cfitsio  3.41
cmake 2.8.12.2
ds9 8.0.1
dysco 
fftw 3.3.8
hdf5 1.8.21
idg 
lofar
losoto 2.0
lsmtool 1.4.1
make 3.82
openblas
pybdsf 1.8.15
python-casacore
superlu
wcslib
wsclean 2.7.2

Python Packages:

APLpy==1.1.1
astropy==2.0.14
atomicwrites==1.3.0
attrs==19.1.0
backports.functools-lru-cache==1.5
backports.ssl-match-hostname==3.5.0.1
boost==0.1
certifi==2019.6.16
chardet==3.0.4
cycler==0.10.0
decorator==4.4.0
funcsigs==1.0.2
h5py==2.9.0
idna==2.8
iniparse==0.4
ipaddress==1.0.16
IPy==0.75
kitchen==1.1.1
kiwisolver==1.1.0
linecache2==1.0.0
Mastodon.py==1.4.6
matplotlib==2.2.4
mimeparse==0.1.3
mock==3.0.5
more-itertools==5.0.0
nose==1.3.7
numexpr==2.7.0
numpy==1.16.4
pluggy==0.7.1
policycoreutils-default-encoding==0.1
pp==1.6.5
progressbar==2.5
py==1.8.0
pycurl==7.19.0
pygobject==3.22.0
pygpgme==0.3
pyliblzma==0.5.3
pyparsing==2.4.2
pytest==3.6.4
python-dateutil==2.8.0
python-magic==0.4.15
python-monetdb==11.19.3.2
pytz==2019.2
pyvo==0.9.3
pyxattr==0.5.1
requests==2.22.0
scipy==1.2.2
seobject==0.1
sepolicy==1.1
six==1.12.0
SQLAlchemy==1.3.7
subprocess32==3.5.4
tables==3.5.2
traceback2==1.4.0
unittest2==1.1.0
urlgrabber==3.10
urllib3==1.25.3
xmlrunner==1.7.7
yum-metadata-parser==1.1.4