Dataset Open Access

Design and in vitro realization of carbon-conserving photorespiration - Computational Analysis

Trudeau, Devin L.; Edlich-Muth, Christian; Zarzycki, Jan; Scheffen, Marieke; Goldsmith, Moshe; Khersonsky, Olga; Avizemer, Ziv; Fleishman, Sarel J.; Cotton, Charles A.R; Erb, Tobias J.; Tawfik, Dan S.; Bar-Even, Arren

Our aim is to develop a framework for modeling C3 photosynthesis in mesophyll cells that allows us to compare native photorespiration with engineered photosynthetic shunts. In particular, we want to model conditions that are most relevant to agricultural crops, i.e. a range of light intensities and both ambient and low CO2 intercellular airspace concentrations. Here we presented our computational analysis based on pathSeekR, the stoichiometric-kinetic model,  kinetic models of photorespiration shunts and pathSeekR pathway architectures. 

Supplementary Material to https://doi.org/10.1073/pnas.1812605115
Files (7.5 MB)
Name Size
pnas.1812605115.sd01_SI_ComputationalAnalysis.pdf
md5:20d0d4a09c754bdf6740b712f9b3e7e6
7.5 MB Download
36
25
views
downloads
All versions This version
Views 3636
Downloads 2525
Data volume 187.1 MB187.1 MB
Unique views 3333
Unique downloads 2222

Share

Cite as