Dataset Open Access

Design and in vitro realization of carbon-conserving photorespiration - Computational Analysis

Trudeau, Devin L.; Edlich-Muth, Christian; Zarzycki, Jan; Scheffen, Marieke; Goldsmith, Moshe; Khersonsky, Olga; Avizemer, Ziv; Fleishman, Sarel J.; Cotton, Charles A.R; Erb, Tobias J.; Tawfik, Dan S.; Bar-Even, Arren

Our aim is to develop a framework for modeling C3 photosynthesis in mesophyll cells that allows us to compare native photorespiration with engineered photosynthetic shunts. In particular, we want to model conditions that are most relevant to agricultural crops, i.e. a range of light intensities and both ambient and low CO2 intercellular airspace concentrations. Here we presented our computational analysis based on pathSeekR, the stoichiometric-kinetic model,  kinetic models of photorespiration shunts and pathSeekR pathway architectures. 

Supplementary Material to https://doi.org/10.1073/pnas.1812605115
Files (7.5 MB)
Name Size
pnas.1812605115.sd01_SI_ComputationalAnalysis.pdf
md5:20d0d4a09c754bdf6740b712f9b3e7e6
7.5 MB Download
64
56
views
downloads
All versions This version
Views 6464
Downloads 5656
Data volume 419.1 MB419.1 MB
Unique views 5555
Unique downloads 4848

Share

Cite as