Software Open Access

Reconstruction Algorithms in Undersampled AFM Imaging - final code

Arildsen, Thomas; Oxvig, Christian Schou; Pedersen, Patrick Steffen; Østergaard, Jan; Larsen, Torben

This software was used for producing the simulation results for the paper "Reconstruction Algorithms in Undersampled AFM
Imaging", published in IEEE Journal of Selected Topics in Signal Processing: http://dx.doi.org/10.1109/JSTSP.2015.2500363.

This deposition consists of a number of Python scripts, some of which were used for producing the results in the accompanying data set available at http://dx.doi.org/10.5281/zenodo.32958 and some of which can be used to extract data and images from said data set. The deposition further contains a README file explaining the purpose and use of the individual files as well as MD5 and SHA checksums of the files for validating the integrity of the files after download.

The scripts are licensed under the BSD 2-Clause license (http://opensource.org/licenses/BSD-2-Clause).

The scripts perform and analyse results from simulations using images, and reconstructed versions of these, originally published in the data set available at http://dx.doi.org/10.5281/zenodo.17573.

Files (269.8 kB)
Name Size
amp_bgg_solver.py
md5:28cfbee61c6a2a3ddea580caa9324c03
3.4 kB Download
analyse_data.ipynb
md5:e4ea6c2e8a2731b63b48eb3374a0046c
62.4 kB Download
aspmci_reconstructions_128.py
md5:218ac136140a668a8465c715adca84a5
33.4 kB Download
aspmci_reconstructions_256.py
md5:56373ec1041af56b3810df7c61f8dd70
33.4 kB Download
extract_data_128.py
md5:752b9e4e766dbbc0c53cd88439fc1e15
6.7 kB Download
extract_data_256.py
md5:6c3a60d489ece917512204d1992d568c
6.6 kB Download
extract_originals.py
md5:c76c6caf18e7ac0264b49bdf5769fbc9
2.8 kB Download
extract_patterns.py
md5:bc06550e72e4f06a3bd4b4475346bb9b
1.8 kB Download
extract_recon_imgs_128.py
md5:6f85a69a8d06e0a7f265a38d617ad54f
6.5 kB Download
extract_recon_imgs_256.py
md5:c92a60f68264a5265c9d8c5db8cdbea3
6.0 kB Download
extract_recon_imgs_other_128.py
md5:d473e7d0e003c24796b1b32e7087a245
4.7 kB Download
extract_recon_imgs_other_256.py
md5:6c8e6e3cc5fa12dd8df06ca86c57be8d
4.7 kB Download
gamp_reconstructions.py
md5:44ce3c2a170fdc7a58c6359834097991
3.1 kB Download
interp_reconstructions.py
md5:c3338c67d51eb4f5d0d88a7c3ec57e70
6.4 kB Download
it_reconstructions.py
md5:364da33e9ceb01b8f845edbf5766d7c6
6.9 kB Download
LICENSE.txt
md5:69b56c72a79156627b0c7ac9a85d03db
1.3 kB Download
MD5SUMS.txt
md5:98a5d4c24c44d46dee07ef0bc9c6e1ab
425 Bytes Download
optim_reconstructions.py
md5:1e1a6e1ef8dd97353f9babeb86dc9882
14.0 kB Download
README.rst
md5:7ff4d54fc09787cdfdada00869ec9d86
6.0 kB Download
reconstruction_goblet_128.py
md5:4736cd9b20d0b7ddbefe3065e1e07415
18.9 kB Download
reconstruction_goblet_256.py
md5:e14fdc64f711aa84b4e5be0d5ae6ef07
18.9 kB Download
SHA256SUMS.txt
md5:18ea391cbf289a29437b38b90e45f7f8
681 Bytes Download
utils.py
md5:9d998c7ce1b4c6c5e44c1fac984e44ba
20.8 kB Download
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