Published July 10, 2019
| Version 1.1
Software
Open
Pipeline for metabarcoding of fungi with more than one marker (5.8S and ITS2)
Creators
- 1. Leibniz Institute of Freshwater Ecology and Inland Fisheries, Ecosystem Research; Berlin Center for Genomics in Biodiversity Research
- 2. Technical University of Munich, Chair of Urban Water Systems Engineering; Leibniz Institute of Freshwater Ecology and Inland Fisheries, Ecosystem Research; Berlin Center for Genomics in Biodiversity Research
- 3. Leibniz Institute for Zoo and Wildlife Research, Department of Evolutionary Genetics; Berlin Center for Genomics in Biodiversity Research
- 4. Leibniz Institute of Freshwater Ecology and Inland Fisheries, Ecosystem Research; Berlin Center for Genomics in Biodiversity Research; Free University of Berlin, Institut für Biologie
Description
Snakemake pipeline for analysis of metabarcoding data of fungi with two markers (5.8S and ITS2) from the same amplicon to improve high level classification of species not found in the reference data base.
Files
two_marker_metabarcoding-1.1.zip
Files
(1.1 MB)
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