Published March 22, 2019
| Version 0.1
Dataset
Open
Coolpup.py – a versatile tool to perform pile-up analysis of Hi-C data
Authors/Creators
- 1. MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Crewe Road South, Edinburgh EH4 2XU, UK
- 2. MRC Centre for Regenerative Medicine, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh BioQuarter, 5 Little France Drive, Edinburgh EH16 4UU, UK
Description
Data used for the analysis and to generate the figures. After un-tar-ing, the data is present in three folders. /coolers contains Hi-C data in the .cool format, and associated text files. /beds contains .bed and .bedpe files used in the analysis. /enrichment_jsons contains .json files with results of the "loop-ability" analysis. Code for the data analysis is available here: https://github.com/Phlya/coolpuppy_paper
Files
Files
(33.8 GB)
| Name | Size | Download all |
|---|---|---|
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md5:116757af5d04138a7ed3102925880b17
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33.8 GB | Download |
Additional details
Related works
- Is supplement to
- 10.1101/586537 (DOI)
- https://github.com/Phlya/coolpuppy_paper (URL)