Published June 10, 2019
| Version 2.0.7
Software
Open
nf-core/eager: [2.0.7] - 2019-06-10
Creators
- 1. @qbicsoftware
- 2. Max Planck institute for the Science of Human Evolution
- 3. @Gregor-Mendel-Institute
- 4. @SciLifeLab | Karolinska Institutet
- 5. Seqera Labs and @nextflow-io
Description
[2.0.7] - 2019-06-10
Added
- #189 - Outputing unmapped reads in a fastq files with the --strip_input_fastq flag
- #186 - Make FastQC skipping [possible] /(https://github.com/nf-core/eager/issues/182)
- Merged in nf-core/tools release V1.6 template changes
- A lot more automated tests using Travis CI
- Don't ignore DamageProfiler errors anymore
- #220 - Added post-mapping filtering statistics module and corresponding MultiQC statistics #217
Fixed
- #152 - DamageProfiler errors won't crash entire pipeline anymore
- #176 - Increase runtime for DamageProfiler on large reference genomes
- #172 - DamageProfiler errors won't crash entire pipeline anymore
- #174 - Publish DeDup files properly
- #196 - Fix reference issues
- #196 - Fix issues with PE data being mapped incompletely
- #200 - Fix minor issue with some typos
- #210 - Fix PMDTools encoding issue from
samtools calmdgenerated files by running throughsa]mtools viewfirst - #221 - Fix BWA Index not being reused by multiple samples
Dependencies
- Added DeDup v0.12.5 (json support)
- Added mtnucratio v0.5 (json support)
- Updated Picard 2.18.27 -> 2.20.2
- Updated GATK 4.1.0.0 -> 4.1.2.0
- Updated damageprofiler 0.4.4 -> 0.4.5
- Updated r-rmarkdown 1.11 -> 1.12
- Updated fastp 0.19.7 -> 0.20.0
- Updated qualimap 2.2.2b -> 2.2.2c
Files
nf-core/eager-2.0.7.zip
Files
(90.6 kB)
| Name | Size | Download all |
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md5:fc06f765cac739f8080ed2da4a4ca402
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Additional details
Related works
- Is supplement to
- https://github.com/nf-core/eager/tree/2.0.7 (URL)