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Published May 28, 2019 | Version 2.4.1
Software Open

nipy/nibabel: 2.4.1

Creators

  • 1. School of Psychology, University of Birmingham, Birmingham, UK
  • 2. Stanford University
  • 3. Otto-von-Guericke-University Magdeburg, Germany
  • 4. Microsoft Research, Montréal, Québec, Canada
  • 5. UC San Diego
  • 6. Center for Open Neuroscience, Dartmouth College
  • 7. Dartmouth College: Hanover, NH, United States
  • 8. Wellcome Centre for Integrative Neuroimaging, University of Oxford, UK
  • 9. MIT, HMS
  • 10. University of Washington: Seattle, WA, United States
  • 11. Athena EPI, Inria Sophia-Antipolis
  • 12. Institute of Neuroinformatics, ETH/University of Zurich
  • 13. Deptartment of Radiology, University of Cincinnati College of Medicine, Cincinnati, OH
  • 14. Harvard University - Psychology
  • 15. The University of Washington eScience Institute
  • 16. Berkeley Institute for Data Science, UC Berkeley
  • 17. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
  • 18. Montreal Neurological Institute and Hospital
  • 19. Rotman Research Institute, Baycrest Health Sciences, Toronto, ON, Canada
  • 20. SRI International
  • 21. MIT
  • 22. BrainSpec, Boston, MA
  • 23. INRIA
  • 24. Université de Sherbrooke
  • 25. McGill University
  • 26. University College London, London, UK
  • 27. University of California, San Francisco
  • 28. Department of Neuropsychiatry, University of Pennsylvania
  • 29. CEA
  • 30. University College London
  • 31. Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, MA
  • 32. TIB – Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany
  • 33. National Technical University of Athens, Greece
  • 34. Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
  • 35. National Institute of Mental Health and Neuro-Sciences, India

Description

Bug fix release for the 2.4.x series.

Most work on NiBabel so far has been by Matthew Brett (MB), Chris Markiewicz (CM), Michael Hanke (MH), Marc-Alexandre Côté (MC), Ben Cipollini (BC), Paul McCarthy (PM), Chris Cheng (CC), Yaroslav Halchenko (YOH), Satra Ghosh (SG), Eric Larson (EL), Demian Wassermann, and Stephan Gerhard.

References like "pr/298" refer to github pull request numbers.

2.4.1 (Monday 27 May 2019)

Contributions from Egor Pafilov, Jath Palasubramaniam, Richard Nemec, and Dave Allured.

Enhancements
  • Enable mmap, keep_file_open options when loading any DataobjImage (pr/759) (CM, reviewed by PM)
Bug fixes
  • Ensure loaded GIFTI files expose writable data arrays (pr/750) (CM, reviewed by PM)
  • Safer warning registry manipulation when checking for overflows (pr/753) (CM, reviewed by MB)
  • Correctly write .annot files with duplicate lables (pr/763) (Richard Nemec with CM)
Maintenance
  • Fix typo in coordinate systems doc (pr/751) (Egor Panfilov, reviewed by CM)
  • Replace invalid MINC1 test file with fixed file (pr/754) (Dave Allured with CM)
  • Update Sphinx config to support recent Sphinx/numpydoc (pr/749) (CM, reviewed by PM)
  • Pacify FutureWarning and DeprecationWarning from h5py, numpy (pr/760) (CM)
  • Accommodate Python 3.8 deprecation of collections.MutableMapping (pr/762) (Jath Palasubramaniam, reviewed by CM)
API changes and deprecations
  • Deprecate keep_file_open == 'auto' (pr/761) (CM, reviewed by PM)

Files

nipy/nibabel-2.4.1.zip

Files (4.5 MB)

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Additional details

Related works

Is supplement to
https://github.com/nipy/nibabel/tree/2.4.1 (URL)