Planned intervention: On Thursday March 28th 07:00 UTC Zenodo will be unavailable for up to 5 minutes to perform a database upgrade.
Published September 24, 2015 | Version v1
Software Open

MiToBo - A Microscope Image Analysis Toolbox: v1.7

  • 1. Institute of Computer Science, Martin Luther University Halle-Wittenberg, Germany
  • 2. Institute of Molecular Medicine, Martin Luther University Halle-Wittenberg, Germany

Description

The Microscope Image Analysis Toolbox MiToBo is a Java toolbox and library of basic, intermediate and advanced image processing and analysis algorithms and tools. The toolbox for instance offers various filters (e.g., Gauss and Gabor filters, rank operators, vesselness filters), image enhancement approaches, image transformations (e.g., wavelets) and segmentation algorithms (e.g., thresholding, component labeling, active contours). In addition it ships with several advanced tools mainly dedicated to specific tasks in biomedical or biological image analysis, but not restricted to these fields. Examples are tools for DAPI stained nuclei detection, neurite segmentation, cell segmentation and tracking, and particle detection.

MiToBo builds upon and extends the widely used image processing application ImageJ (http://imagej.nih.gov/ij/). All of its operators can be run from within ImageJ, but stand-alone usage or using MiToBo as a library for your own development is also possible. Finally, since MiToBo is based on Alida (http://www.informatik.uni-halle.de/alida), an advanced library for integrated development of data analysis applications, it offers a user- and programmer friendly framework for developing new image processing and analysis algorithms including automatic generation of user interfaces and a graphical workflow editor.

Notes

The MiToBo distribution is available in two versions. The basic version (file mitobo-1.7-bin.zip) contains MiToBo with all its operators, algorithms, start scripts and documentation while the extended version (file mitobo-plugins-1.7-bin.zip) also includes ImageJ plugins for directly integrating and running MiToBo from within ImageJ.

Files

mitobo-1.7-bin.zip

Files (129.6 MB)

Name Size Download all
md5:331b23457f5be2629ffe6f0ed6a39150
67.3 MB Preview Download
md5:bbf93e8eccfcf62d04bf632485ac2b51
62.3 MB Preview Download

Additional details