Training data for 'Exome sequencing data analysis' tutorial (Galaxy Training Material)

The data used in this tutorial are a subset of the data published previously in Training material for the course "Exome analysis with GALAXY". Credit for uploading the original data goes to Paolo Uva and Gianmauro Cuccuru!

Specifically, you may need the following datasets for following the tutorial:

Raw sequencing reads

• https://zenodo.org/record/3243160/files/father_R1.fq.gz
• https://zenodo.org/record/3243160/files/father_R2.fq.gz
• https://zenodo.org/record/3243160/files/mother_R1.fq.gz
• https://zenodo.org/record/3243160/files/mother_R2.fq.gz
• https://zenodo.org/record/3243160/files/proband_R1.fq.gz
• https://zenodo.org/record/3243160/files/proband_R2.fq.gz

Premapped sequencing reads

• https://zenodo.org/record/3243160/files/mapped_reads_father.bam
• https://zenodo.org/record/3243160/files/mapped_reads_mother.bam
• https://zenodo.org/record/3243160/files/mapped_reads_proband.bam

Reference sequence (human chromosome 8)

• https://zenodo.org/record/3243160/files/hg19_chr8.fa.gz

If you would just like to play with GEMINI rather than work through the full tutorial, you'll find below a prebuilt GEMINI database (for GEMINI version 0.20.1) for the family trio. You can start exploring this database without having to run GEMINI load and, in fact, without having to install GEMINI's bundled annotation data.