Table S1 - Table S7: Integrated meta-omic analyses of the gastrointestinal tract microbiome in patients undergoing allogeneic stem cell transplantation

Table S1. Number of reads per prokaryotic operational taxonomic unit (OTU) and sample from the cohort.

Table S2. Number of reads per eukaryotic operational taxonomic unit (OTU) and sample from the cohort.

Table S3. Blood cell counts and clinical data from patient A07.

Table S4. Number of reads per operational taxonomic unit (OTU) and sample from patient A07.

Table S5. Numbers of identified antibiotic resistance genes and total number of genes. Numbers of identified antibiotic resistance genes in relation to total numbers of genes in samples from patient A07 before and after allo-HSCT and from four healthy individuals.

Table S6. Statistics of the metagenomic and metatranscriptomic datasets and the co-assembled contigs.

Table S7. Antibiotic resistance genes in population-level genomes and their expression in the pre- and post-treatment sample.