Biodiversity Literature Repository
Published December 31, 2017 | Version v1
Journal article Restricted

Nuclear markers support the mitochondrial phylogeny of Vipera ursinii – renardi complex (Squamata: Viperidae) and species status for the Greek meadow viper

Creators

Description

Mizsei, Edvárd, Jablonski, Daniel, Roussos, Stephanos A., Dimaki, Maria, Ioannidis, Yannis, Nilson, Göran, Nagy, Zoltán T. (2017): Nuclear markers support the mitochondrial phylogeny of Vipera ursinii – renardi complex (Squamata: Viperidae) and species status for the Greek meadow viper. Zootaxa 4227 (1): 75-88, DOI: 10.11646/zootaxa.4227.1.4

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Cites
Publication: 10.1111/j.1096-0031.2009.00261.x (DOI)
Publication: 10.1093/bioinformatics/btq110 (DOI)
Publication: 10.1046/j.1365-294x.2000.01020.x (DOI)
Publication: 10.1111/j.1365-2699.2012.02753.x (DOI)
Publication: 10.1111/j.1755-0998.2009.02732.x (DOI)
Publication: 10.1016/j.ympev.2010.01.007 (DOI)
Publication: 10.1016/j.ympev.2011.12.001 (DOI)
Publication: 10.13128/Acta_Herpetol-2683 (DOI)
Publication: 10.1139/x06-225 (DOI)
Publication: 10.1093/molbev/mss020 (DOI)
Publication: 10.1111/j.1463-6409.2010.00453.x (DOI)
Publication: 10.1111/j.1463-6409.1988.tb00106.x (DOI)
Publication: 10.1111/j.1365-294X.2006.03031.x (DOI)
Publication: 10.2307/2412809 (DOI)
Publication: 10.1016/j.ympev.2008.08.019 (DOI)
Publication: 10.1016/j.ympev.2014.12.005 (DOI)
Has part
Taxonomic treatment: 10.5281/zenodo.5657545 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/FB6FF304FFA3E07C008DC38C279212A0 (URL)
Dataset: http://table.plazi.org/id/27B9129AFFA8E077006DC165249E17C5 (URL)
Figure: 10.5281/zenodo.266381 (DOI)
Figure: 10.5281/zenodo.266382 (DOI)
Figure: 10.5281/zenodo.266383 (DOI)
Figure: 10.5281/zenodo.266384 (DOI)
Is source of
Dataset: http://www.gbif.org/dataset/df8f4f25-cc32-4f75-91ae-0caa0537ddcb (URL)

References

  • Holotype. Goteborg Natural History Museum, GNM Re. ex. 4942. Leg. Nilson & Andren 1988.
  • Arevalo, E., Davis, S.K. & Sites, J.W. (1994) Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico. Systematic Biology, 43 (3), 387-418.
  • Assis, L.C.S. (2009) Coherence, correspondence, and the renaissance of morphology in phylogenetic systematics. Cladistics, 25 (5), 528-544.
  • https://doi.org/10.1111/j.1096-0031.2009.00261.x
  • Baker, R.J. & Bradley, R.D. (2006) Speciation in Mammals and the Genetic Species Concept. Journal of Mammalogy, 87 (4), 643-662.
  • Bouckaert, R.R. (2010) DensiTree: making sense of sets of phylogenetic trees. Bioinformatics, 26 (10), 1372-1373. https://doi.org/10.1093/bioinformatics/btq110
  • Bryant, D. & Moulton, V. (2004) NeighborNet: an agglomerative algorithm for the construction of planar phylogenetic networks. Molecular Biology and Evolution, 21 (2), 255-265.
  • Carranza, S., Arnold, E.N. & Pleguezuelos, J.M. (2006) Phylogeny, biogeography, and evolution of two Mediterranean snakes, Malpolon monspessulanus and Hemorrhois hippocrepis (Squamata, Colubridae), using mtDNA sequences. Molecular Phylogenetics and Evolution, 40 (2), 532-546.
  • Clement, M., Posada, D. & Crandall, K.A. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9 (10), 1657-1659.
  • https://doi.org/ 10.1046/j.1365-294x.2000.01020.x
  • Cracraft, J. (1983) Species concepts and speciation analysis. In: Johnston, R.F. (Ed.), Current Ornithology. Vol. 1. Springer US, Boston, pp. 159-187.
  • de Queiroz, K. (1998) The general lineage concept of species, species criteria, and the process of speciation: a conceptual unification and terminological recommendations. In: Howard, D.J. & Berlocher, S.H. (Eds.), Endless Forms: Species and Speciation. Oxford University Press, New York, pp. 57-75.
  • Dimitropoulos, A. (1985) First records of Orsini's viper, Vipera ursinii (Viperidae) in Greece. Annales Musei Goulandris, 7, 319-323.
  • Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012a) Bayesian Phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29 (8), 1969-1973.
  • Drummond, A.J., Xie, W. & Heled, J. (2012b) Bayesian Inference of Species Trees from Multilocus Data using *BEAST. Available from: http://beast.bio.ed.ac.uk/tutorials (accessed 20 December 2016)
  • Ferchaud, A.-L., Ursenbacher, S., Cheylan, M., Luiselli, L., Jelic, D., Halpern, B., Major, A., Kotenko, T., Keyan, N., Crnobrnja-Isailovic, J., Tomovic, L., Ghira, I., Ioannidis, Y., Arnal, V. & Montgerald, C. (2012) Phylogeography of the Vipera ursinii complex (Viperidae): mitochondrial markers reveal an east-west disjunction in the Palaearctic region. Journal of Biogeography, 39 (10), 1836-1847.
  • https://doi.org/10.1111/j.1365-2699.2012.02753.x
  • Flot, J.F. (2010) Seqphase: A web tool for interconverting phase input/output files and fasta sequence alignments. Molecular Ecology Resources, 10 (1), 162-166.
  • https://doi.org/10.1111/j.1755-0998.2009.02732.x
  • Gvozdik, V., Jandzik, D., Lymberakis, P., Jablonski, D. & Moravec, J. (2010) Slow worm, Anguis fragilis (Reptilia: Anguidae) as a species complex: Genetic structure reveals deep divergences. Molecular Phylognetics and Evolution, 55 (2), 460-472. https://doi.org/10.1016/j.ympev.2010.01.007
  • Gvozdik, V., Jandzik, D., Cordos, B., Rehak, I. & Kotlik, P. (2012) A mitochondrial DNA phylogeny of the endangered vipers of the Vipera ursinii complex. Molecular Phylogenetics and Evolution, 62 (3), 1019-1024. https://doi.org/10.1016/j.ympev.2011.12.001
  • Heled, J. & Drummond, A.J. (2010) Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution, 27 (3), 570-580.
  • Huson, D.H. & Bryant, D. (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution, 23 (2), 254-267.
  • Joger, U., Fritz, U., Guicking, D., Kalyabina-Hauf, S.A., Nagy, Z.T. & Wink. M. (2007) Phylogeography of western Palaearctic reptiles - Spatial and temporal speciation patterns. Zoologischer Anzeiger - A Journal of Comparative Zoology, 246 (4), 293-313.
  • Kalyabina-Hauf, S.A., Schweiger, S., Joger, U., Mayer, W., Orlov, N. & Wink, M. (2004) Phylogeny and systematics of adders (Vipera berus complex). In: Joger, U. & Wollesen, R. (Eds.), Mertensiella. Vol. 15. Verbreitung, Okologie und Schutz der Kreuzotter (Vipera berus [Linnaeus, 1758]). Deutsche Gesellschaft fur Herpetologie und Terrarienkunde, pp. 7-16.
  • Kindler, C., Bohme, W., Corti, C., Gvozdik, V., Jablonski, D., Jandzik, D., Metallinou, M. Siroky, P. & Fritz, U. (2013) Mitochondrial phylogeography, contact zones and taxonomy of grass snakes (Natrix natrix, N. megalocephala). Zoologica Scripta, 42 (5), 458-472.
  • Korsos, Z., Barina, Z. & Pifko, D. (2008) First record of Vipera ursinii graeca in Albania (Reptilia: Serpentes, Viperidae). Acta Herpetologica, 3 (2), 167-173.
  • https://doi.org/10.13128/Acta_Herpetol-2683
  • Kotenko, T., Morozov-Leonov, S.Y. & Mezhzherin, S.V. (1999) Biochemical genetic differentiation of the steppe viper (Vipera ursinii group) in Ukraine and Romania. In: 10th Ordinary General Meeting of the Societas Europaea Herpetologica. Natural History Museum of Crete, Irakleio. pp. 88-90.
  • Kunstler, G., Chaduf, J., Klein, E.K., Curt, T., Bounchaud, M. & Lepart, J. (2007) Tree colonization of sub-Mediterranean grasslands: effects of dispersal limitation and shrub facilitation. Canadian Journal of Forest Research, 37 (1), 103-115. https://doi.org/10.1139/x06-225
  • Lanfear, R., Calcott, B., Ho, S.Y.W. & Guindon, S. (2012) PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution, 29 (6), 1695-1701. https://doi.org/10.1093/molbev/mss020
  • Lemonnier-Darcemont, M., Puskas, G. & Darcemont, C. (2015) First overview of the south Albanian Orthoptera fauna. Articulata, 30, 63-80.
  • Librado, P. & Rozas, J. (2009) DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25 (11), 1451-1452.
  • Ljubisavljevic, K., Arribas, O., Dzukic, G. & Carranza, S. (2007) Genetic and morphological differentiation of Mosor rock lizard, Dinarolacerta mosorensis (Kolombatovic, 1886), with the description of a new species from the Prokletije Mountain Massif (Montenegro) (Squamata: Lacertidae). Zootaxa, 1613, 1-22.
  • Martin, D.P., Lemey, P., Lott, M., Moulton, V., Posada, D., & Lefeuvre, P. (2010) RDP3: a flexible and fast computer program for analysing recombination. Bioinformatics, 26 (19), 2462-2463.
  • Miralles, A., Vasconcelos, R., Perera, A., Harris, D.J. & Carranza, S. (2010) An integrative taxonomic revision of the cape Verdean skinks (Squamata, Scincidae). Zoologica Scripta, 40 (1), 16-44..
  • https://doi.org/10.1111/j.1463-6409.2010.00453.x
  • Mizsei, E., Uveges, B., Vagi, B., Szabolcs, M., Lengyel, S., Pfliegler, W.P., Nagy, Z.T. & Toth, J.P. (2016) Species distribution modelling leads to the discovery of new populations of one of the least known European snakes, Vipera ursinii graeca, in Albania. Amphibia-Reptilia, 37 (1), 55-68.
  • Nilson, G. & Andren, C. (1988) A new subspecies of the subalpine meadow viper, Vipera ursinii (Bonaparte) (Reptilia, Viperidae), from Greece. Zoologica Scripta, 17 (3), 311-314.
  • https://doi.org/10.1111/j.1463-6409.1988.tb00106.x
  • Nilson, G. & Andren, C. (2001) The Meadow and Steppe Vipers of Europe and Asia - The Vipera (Acridophaga) ursinii complex. Acta Zoologica, 47 (2-3), 87-267.
  • Nilson, G., Andren, C. & Joger, U. (1993) A re-evaluation of the taxonomic status of the Moldavian steppe viper based on immunological investigations, with a discussion of the hypothesis of secondary intergradation between Vipera ursinii rakosiensis and Vipera (ursinii) renardi. Amphibia-Reptilia, 14 (1), 45-57.
  • Noonan, B.P. & Chippindale, P.T. (2006) Dispersal and vicariance: The complex evolutionary history of boid snakes. Molecular Phylogenetics and Evolution, 40 (2), 347-358.
  • Papanastasis, V.P., Kyriakakis, S. & Kazakis, G. (2002) Plant diversity in relation to overgrazing and burning in mountain mediterranean ecosystems. Journal of Mediterranean Ecology, 3 (2-3), 53-63.
  • Pisani, D., Benton, M.J. & Wilkinson, M. (2007) Congruence of morphological and molecular phylogenies. Acta Biotheoretica, 55 (3), 269-281.
  • Rambaut A., Suchard, M.A., Xie, W. & Drummond, A.J. (2013) Tracer v1.6. 796 the BEAST site. Available from: http:// beast.bio.ed.ac.uk/Tracer (accessed 20 December 2016)
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61 (3), 539-542.
  • Speybroeck, J., Beukema, W. & Crochet, P.A. (2010) A tentative species list of the European herpetofauna (Amphibia and Reptilia) - an update. Zootaxa, 2492, 1-27.
  • Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30, 1312-3.
  • Stephens, M., Smith, N.J. & Donnelly, P. (2001) A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68 (4), 978-989.
  • Torstrom, S.M., Pangle K.L. & Swanson, B.J. (2014) Shedding subspecies: The influence of genetics on reptile subspecies taxonomy. Molecular Phylogenetics and Evolution, 76, 134-143.
  • Townsend, T.M., Alegre, R.E., Kelley, S.T., Weins, J.J. & Reeder, T.W. (2008) Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: an example from squamate reptiles. Molecular Phylogenetics and Evolution, 47 (1), 129-142.
  • Tuniyev, B., Nilson, G. & Andren, C., (2010) A new species of viper (Reptilia, Viperidae) from the Altay and Saur Mountains, Kazakhstan. Russian Journal of Herpetology, 17 (2), 110-120.
  • Ursenbacher, S., Carlsson, M., Helfer, V., Tegelstrom, H. & Fumagalli, L. (2006) Phylogeography and Pleistocene refugia of the adder (Vipera berus) as inferred from mitochondrial DNA sequence data. Molecular Ecology, 15 (11), 3425-3437. https://doi.org/10.1111/j.1365-294X.2006.03031.x
  • Welch, K.R.G. (1994) Snakes of the world. A Checklist I. Venomous snakes. KCM Books, Somerset, 135 pp.
  • Wiley, E.O. (1978) The evolutionary species concept reconsidered. Systematic Zoology, 27 (1), 17-26. https://doi.org/10.2307/2412809
  • Wuster, W., Peppin, L., Pook, C.E. & Walker, D.E. (2008) A nesting of vipers: Phylogeny and historical biogeography of the Viperidae (Squamata: Serpentes). Molecular Phylogenetics and Evolution, 49 (2), 445-459. https://doi.org/10.1016/j.ympev.2008.08.019
  • Zinenko, O., Stumpel, N., Mazanaeva, L., Bakiev, A., Shiryaev, K., Pavlov, A., Kotenko, T., Kukushkin, O., Chikin, Y., Duisebayeva, T., Nilson, G., Orlov, N.L., Tuniyev, S., Ananjeva, N.B., Murphy, R.W. & Joger, U. (2015) Mitochondrial phylogeny shows multiple independent ecological transitions and northern dispersion despite of Pleistocene glaciations in meadow and steppe vipers (Vipera ursinii and Vipera renardi). Molecular Phylogenetics and Evolution, 84, 85-100. https://doi.org/10.1016/j.ympev.2014.12.005