Published August 26, 2020
| Version 1.2.0
Dataset
Open
Test data for sv-callers workflow
Creators
- 1. Netherlands eScience Center
- 2. University Medical Center Utrecht
Description
This distribution includes data analyzed by the sv-callers workflow (v1.1.0) in the single-sample (germline) and paired-sample (somatic) modes:
- human reference genomes (in .fa[sta])
- excluded genomic regions (in .bed[pe])
- structural variants (SVs) detected by the workflow (in .vcf)
- SV truth sets (in .bed[pe] and .vcf.gz)
- Personalis/1000 Genomes Project data by Parikh et al. (2016)
- PacBio/Moleculo data by Layer et al. (2014)
- dbVar:nstd167 data by Wenger et al. (2019)
- dbVar:nstd137 data by Huddleston et al. (2017)
- workflow samples (in .csv) and config files (in .yaml)
- short-read alignments are not included due to large sizes but are freely available for download (in .bam)
- NA12878 sample
- NA24385 sample
- CHM1_CHM13 sample
- COLO829 tumor sample with matched normal sample
- Jupyter Notebooks to analyze SV callsets (in .ipynb)
Files
sv-callers_data.zip
Files
(6.6 GB)
Name | Size | Download all |
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md5:2b72e4a336313d703022a64cf19b9356
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Additional details
Related works
- Is compiled by
- Software: 10.5281/zenodo.1217111 (DOI)