Published April 24, 2019
| Version 1
Dataset
Open
102 hpf medaka embryos in 96 well plate (4 embryo/well) - brightfield - 2X magnification - ACQUIFER Imaging Machine
Creators
- 1. COS Heidelberg, Germany
- 2. ACQUIFER is a division of DITABIS AG, Pforzheim, Germany
Description
Dataset originates from:
Gierten, J., Pylatiuk, C., Hammouda, O. T., Schock, C., Stegmaier, J., Wittbrodt, J., Gehrig, J. and Loosli, F. (2020). Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions. Sci Rep 10, 2046, doi:10.1038/s41598-020-58563-w.
Used as benchmark dataset for Multi-Template-Matching by Thomas and Gehrig
See implementation in Fiji https://github.com/LauLauThom/MultipleTemplateMatching
and in KNIME https://github.com/LauLauThom/MultipleTemplateMatching-KNIME
Contacts: j.gehrig(at)acquifer.de, l.thomas(at)acquifer.de, jakob.gierten(at)cos.uni-heidelberg.de
Files
WE00049---E001--PO01--LO001--CO6--00000000_00.01.00_00.16.00,000.jpg
Files
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Additional details
Related works
- Is supplement to
- Journal article: 10.1186/s12859-020-3363-7 (DOI)
- Journal article: 10.1038/s41598-020-58563-w (DOI)