Genome assemblies of Bacteroides fragilis CCUG4856T(=ATCC25285=NCTC9343)
Creators
- 1. Research Unit for Clinical Microbiology, Department of Clinical Research, University of Southern Denmark
Description
Supplementary material for the manuscript Insights from complete, circular genome assembly and plasmid identification of six clinical multidrug resistant Bacteroides fragilis isolates.
141 genome assemblies of Bacteroides fragilis CCUG4856T(=ATCC25285=NCTC9343) using Illumina and Oxford Nanopore data with the following assemblers and polishing tools
Wtdbg2 v2.3 (https://github.com/ruanjue/wtdbg2)
Miniasm v0.3r179 (https://github.com/lh3/miniasm)
Flye v2.3.7 (https://github.com/fenderglass/Flye)
Canu v1.8 (https://github.com/marbl/canu)
Spades (including Hybridspades) v3.13.0 (https://github.com/ablab/spades)
Skesa v2.3.0 (https://github.com/ncbi/SKESA)
Unicycler v0.4.7 (https://github.com/rrwick/Unicycler)
Nanopolish v0.10.2 (https://github.com/jts/nanopolish)
Racon v1.3.1 (https://github.com/isovic/racon)
Pilon v1.22 (https://github.com/broadinstitute/pilon)
Methods and source code are available in the manuscript and at https://github.com/thsyd/bfassembly
Files
Files
(221.3 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:4d632fa7ad09e19884820c00cb25061b
|
221.3 MB | Download |
Additional details
Related works
- Is cited by
- 10.1101/633602 (DOI)