Homologous membrane protein structures (HOMEP) dataset version v2
Description
Protein structures from the dataset of Homologous MEmbrane Protein structures (HOMEP) version v2 created in 2010, published in 2013. A more automated version of HOMEP v1: 10.5281/zenodo.2646534
Table 1 = List of protein databank structure entries
From Stamm et al, PLOS One 2013, https://www.ncbi.nlm.nih.gov/pubmed/23469223, Supplementary Table 1, with the following entries:
Family grouping, Protein databank identifier, Name, Source organism, Resolution (Å)
Table 2 = List of pairs of structures
From Stamm et al, PLOS One 2013, https://www.ncbi.nlm.nih.gov/pubmed/23469223, Supplementary Table 2, with the following entries:
Family grouping, PDB code for first structure, Chain ID from PDB1, PDB for second structure, Chain ID from PDB2, protein structural difference (PSD), % sequence identity
File S2 HOMEP2 Dataset.tar.gz = Protein databank format files (PDB) are attached in the Dataset tar zipped file, organized by family. From Stamm et al, PLOS One 2013, https://www.ncbi.nlm.nih.gov/pubmed/23469223, Supplementary dataset.
Notes
Files
HOMEP_v2_Table1_List.csv
Additional details
Related works
- Is supplement to
- 10.1371/journal.pone.0057731 (DOI)
References
- Stamm M, Staritzbichler R, Khafizov K, Forrest LR. Alignment of helical membrane protein sequences using AlignMe. PLoS One. 2013;8(3):e57731. doi: 10.1371/journal.pone.0057731. Epub 2013 Mar 4. PubMed PMID: 23469223; PubMed Central PMCID: PMC3587630