Dataset Open Access

Homologous membrane protein structures (HOMEP) dataset version v2

Forrest, Lucy Rachel; Stamm, Marcus; Staritzbichler, René; Khafizov, Kamil

Protein structures from the dataset of Homologous MEmbrane Protein structures (HOMEP) version v2 created in 2010, published in 2013. A more automated version of HOMEP v1: 10.5281/zenodo.2646534

Table 1 = List of protein databank structure entries
From Stamm et al, PLOS One 2013,, Supplementary Table 1, with the following entries:
Family grouping, Protein databank identifier, Name, Source organism, Resolution (Å)


Table 2 = List of pairs of structures
From Stamm et al, PLOS One 2013,, Supplementary Table 2, with the following entries:
Family grouping, PDB code for first structure, Chain ID from PDB1, PDB for second structure, Chain ID from PDB2, protein structural difference (PSD), % sequence identity


File S2 HOMEP2 Dataset.tar.gz = Protein databank format files (PDB) are attached in the Dataset tar zipped file, organized by family. From Stamm et al, PLOS One 2013,, Supplementary dataset.

Funded by the Max Planck Gesellschaft and the German Research Foundation (DFG; Collaborative Research Center 807 "Transport and Communication across Biological Membranes".
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  • Stamm M, Staritzbichler R, Khafizov K, Forrest LR. Alignment of helical membrane protein sequences using AlignMe. PLoS One. 2013;8(3):e57731. doi: 10.1371/journal.pone.0057731. Epub 2013 Mar 4. PubMed PMID: 23469223; PubMed Central PMCID: PMC3587630

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