Biodiversity Literature Repository
Published March 14, 2019 | Version v1
Journal article Open

Molecular study supports the position of the New Zealand endemic genus Lamellomorpha in the family Vulcanellidae (Porifera, Demospongiae, Tetractinellida), with the description of three new species

Creators

  • 1. Coasts and Oceans National Centre, National Institute of Water and Atmospheric Research, P.O. Box 109-695, Newmarket, Auckland, New Zealand.
  • 2. Pharmacognosy, Department of Medicinal Chemistry, BioMedical Centre, Husargatan 3, Uppsala University, 751 23 Uppsala, Sweden.
  • 3. Coasts and Oceans National Centre, National Institute of Water and Atmospheric Research, P.O. Box 109-695, Newmarket, Auckland, New Zealand. & Nicola.
  • 4. Coasts and Oceans National Centre, National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington, New Zealand. & Diana.
  • 5. Lori J. & Coasts and Oceans National Centre, National Institute of Water and Atmospheric Research, P.O. Box 893, Nelson, New Zealand. & Mike.
  • 6. Coral Reef Research Foundation, Box 1765, Koror, 96940 Palau.

Description

Kelly, Michelle, Cárdenas, Paco, Rush, Nicola, Sim-Smith, Carina, Macpherson, Diana, Page, Mike, Bell, Lori J. (2019): Molecular study supports the position of the New Zealand endemic genus Lamellomorpha in the family Vulcanellidae (Porifera, Demospongiae, Tetractinellida), with the description of three new species. European Journal of Taxonomy 506: 1-25, DOI: 10.5852/ejt.2019.506

Files

source.pdf

Files (7.2 MB)

Name Size Download all
md5:5861874eeac07c526f05654875293cb3
7.2 MB Preview Download

Linked records

Additional details

Cites
Publication: 10.1007/BF01925581 (DOI)
Publication: 10.1007/s12526-017-0775-3 (DOI)
Publication: 10.1371/journal.pone.0018318 (DOI)
Publication: 10.1080/106351598260761 (DOI)
Publication: 10.1021/jo961745j (DOI)
Publication: 10.1007/978-1-4615-0747-5_17 (DOI)
Publication: 10.1093/molbev/mst010 (DOI)
Publication: 10.1111/zoj.12365 (DOI)
Publication: 10.1016/0305-1978(94)90026-4 (DOI)
Publication: 10.1093/bioinformatics/btu531 (DOI)
Publication: 10.1021/np970417r (DOI)
Publication: 10.1109/GCE.2010.5676129 (DOI)
Publication: 10.1186/s12983-015-0099-8 (DOI)
Publication: 10.1093/sysbio/sys029 (DOI)
Publication: 10.1371/journal.pone.0116038 (DOI)
Publication: 10.1093/zoolinnean/zlx110 (DOI)
Publication: 10.1093/bioinformatics/btu033 (DOI)
Publication: 10.1093/icb/ict071 (DOI)
Publication: 10.1038/nchembio.1870 (DOI)
Publication: 10.1038/nchembio.1573 (DOI)
Publication: 10.1038/nature12959 (DOI)
Has part
Taxonomic treatment: 10.5281/zenodo.5619274 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/A458FF36FFC47C566E506621770BFBD4 (URL)
Taxonomic treatment: 10.5281/zenodo.5619276 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/A458FF36FFC47C566D5D61D876ACF90B (URL)
Taxonomic treatment: 10.5281/zenodo.5619278 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/A458FF36FFC47C5B6D1563BF74C2FC9E (URL)
Taxonomic treatment: 10.5281/zenodo.5619280 (DOI)
Taxonomic treatment: urn:lsid:zoobank.org:act:2A7459B3-0FBA-441B-806C-7C988075843A (LSID)
Taxonomic treatment: http://treatment.plazi.org/id/A458FF36FFC97C5F6EE66623710EF9FC (URL)
Taxonomic treatment: 10.5281/zenodo.5619282 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/A458FF36FFCD7C5F6D8363317133F85F (URL)
Taxonomic treatment: 10.5281/zenodo.5619284 (DOI)
Taxonomic treatment: urn:lsid:zoobank.org:act:E3C570FA-832A-4FDB-97D3-5CDA250A3797 (LSID)
Taxonomic treatment: http://treatment.plazi.org/id/A458FF36FFCE7C426EEE64437714FB88 (URL)
Taxonomic treatment: 10.5281/zenodo.5619286 (DOI)
Taxonomic treatment: urn:lsid:zoobank.org:act:78B12A37-93E0-4CA9-9317-81F835B112FE (LSID)
Taxonomic treatment: http://treatment.plazi.org/id/A458FF36FFD07C416EDD61307774FAA5 (URL)
Figure: 10.5281/zenodo.2612961 (DOI)
Figure: 10.5281/zenodo.2612965 (DOI)
Dataset: http://table.plazi.org/id/788E1EA8FFC77C556FB864447787FEDF (URL)
Dataset: http://table.plazi.org/id/788E1EA8FFC87C5A6FB864447787FEDF (URL)
Figure: 10.5281/zenodo.2612967 (DOI)
Figure: 10.5281/zenodo.2612969 (DOI)
Figure: 10.5281/zenodo.2612971 (DOI)
Figure: 10.5281/zenodo.2612973 (DOI)
Figure: 10.5281/zenodo.2612975 (DOI)
Is source of
Dataset: https://www.gbif.org/dataset/0959b45e-e044-4689-8dbf-7e559b5a985f (URL)

References

  • Bergquist P.R.1968.The Marine Fauna of New Zealand:Porifera,Demospongiae,Part1(Tetractinomorpha and Lithistida). New Zealand Department of Scientific and Industrial Research Bulletin 188 (37): 1-105. [New Zealand Oceanographic Institute Memoir].
  • Bewley C.A., Holland N.D. & Faulkner D.J. 1996. Two classes of metabolites from Theonella swinhoei are localized in distinct populations of bacterial symbionts. Experientia 52 (7): 716-722. https://doi.org/10.1007/BF01925581
  • Blunt J.W. & Munro M.H.G. 2008. Lamellomorpha strongylata. In: Blunt J.W. & Munro M.H.G. (eds) Dictionary of Marine Natural Products with CD-ROM: 285, 1798, 1854. Chapman & Hall, CRC Press.
  • Buckingham J., Baggaley K.H., Roberts A.D. & Szabo L.F. 2010. Lamellomorpha strongylata. In: Buckingham J., Baggaley K.H., Roberts A.D. & Szabo L.F. (eds) Dictionary of Alkakoids with CD- ROM, 2nd ed.: 349. CRC Press, Taylor & Francis Group.
  • Bycroft B.W. & Payne D.J. 2014. Lamellomorpha strongylata. In: Bycroft B.W. & Payne D.J. (eds) Dictionary of Antibiotics and Related Substances with CD-ROM, 2nd ed.: 429, 1642. CRC Press, Taylor & Francis Group.
  • Cardenas P. & Moore J.A. 2019. First records of Geodia demosponges from the New England Seamounts, an opportunity to test the use of DNA mini-barcodes on museum specimens. Marine Biodiversity 49 (1): 163-174. https://doi.org/10.1007/s12526-017-0775-3
  • Cardenas P. & Rapp H.T. 2012. A review of Norwegian streptaster-bearing Astrophorida (Porifera: Demospongiae: Tetractinellida), new records and a new species. Zootaxa 3253: 1-52.
  • Cardenas P., Xavier J.R., Reveillaud J., Schander C. & Rapp H.T. 2011. Molecular Phylogeny of the Astrophorida (Porifera, Demospongiae) Reveals an unexpected high level of spicule homoplasy. PLoS ONE 6 (4): e18318. https://doi.org/10.1371/journal.pone.0018318
  • Chombard C., Boury-Esnault N. & Tillier S. 1998. Reassessment of homology of morphological characters in Tetractinellid sponges based on molecular data. Systematic Biology 47: 351-366. https://doi.org/10.1080/106351598260761
  • Cryer M., O'Shea S., Gordon D., Kelly M., Drury J., Morrison M., Hill A., Saunders H., Shankar U., Wilkinson M. & Foster G. 2000. Distribution and structure of benthic invertebrate communities between North Cape and Cape Reinga. Final Research Report for Ministry of Fisheries Research Project ENV9805. Objectives 1-4: 1-154.
  • Dumdei E.J., Blunt J., Munro M.H.G. & Pannell L.K. 1997. Isolation of Calyculins, Calyculinamides, and Swinholide H from the New Zealand deep-water marine sponge Lamellomorpha strongylata. Journal of Organic Chemistry 62 (8): 2636-2639. https://doi.org/10.1021/jo961745j
  • Folmer O., Black M., Hoeh W., Lutz R. & Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294-299.
  • Hickford S.J.H. 2007. Studies in the Chemistry of Marine Natural Products. PhD thesis, University of Canterbury, Christchurch. Available from https://ir.canterbury.ac.nz/handle/10092/1429 [accessed 19 Feb. 2019].
  • Hooper J.N.A. & Maldonado M. 2002. Astrophorida Incertae sedis. In: Hooper J.N.A. & Van Soest R.W.M. (eds) Systema Porifera. Guide to the Classification of Sponges 1: 165- 167. Kluwer Academic/ Plenum Publishers, New York, Boston, Dordrecht, London, Moscow. https://doi.org/10.1007/978-1-4615-0747-5_17
  • Katoh K. & Standley D.M. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30 (4): 772-780. https://doi.org/10.1093/molbev/mst010
  • Kelly M. & Cardenas P. 2016. An unprecedented new genus and family of Tetractinellida (Porifera, Demospongiae) from New Zealand's Colville Ridge, with a new type of mitochondrial group I intron. Zoological Journal of the Linnean Society 177: 335-352. https://doi.org/10.1111/zoj.12365
  • Kelly M. & Sim-Smith C. 2012. A review of Ancorina, Stryphnus, and Ecionemia (Demospongiae, Astrophorida, Ancorinidae), with descriptions of new species from New Zealand waters. Zootaxa 3480: 1-47.
  • Kelly M., Edwards A.R., Wilkinson M.R., Alvarez B., Cook S. de C., Bergquist P.R., Buckeridge St.J., Campbell H.J., Reiswig H.M., Valentine C. & Vacelet J. 2009. Phylum Porifera: Sponges. In: Gordon D.P. (ed.) New Zealand Inventory of Biodiversity: 1. Kingdom Animalia: Radiata, Lophotrochozoa, Deuterostomia: 23-46. Canterbury University Press, Christchurch.
  • Kelly-Borges M., Robinson E.V., Gunasekera S.P., Gunasekera M., Gulavita N.K. & Pomponi S.A. 1994. Species differentiation in the marine sponge genus Discodermia (Demospongiae: Lithistida): the utility of ethanol extract profiles as species-specific chemotaxonomic markers. Biochemical Systematics and Ecology 22 (4): 353-365. https://doi.org/10.1016/0305-1978(94)90026-4
  • Larsson A. 2014. AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30: 3276-3278. https://doi.org/10.1093/bioinformatics/btu531
  • Li S., Dumdei E.J., Blunt J.W., Munro M.H., Robinson W.T. & Pannell L.K. 1998. Theonellapeptolide IIIe, a new cyclic peptolide from the New Zealand deep water sponge, Lamellomorpha strongylata. Journal of Natural Products 61 (6), 724-728. https://doi.org/10.1021/np970417r
  • Maldonado M. 2002. Family Pachastrellidae Carter, 1875. In: Hooper J.N.A. & van Soest R.W.M. (eds) Systema Porifera. A Guide to the Classification of Sponges 1: 141-162. Kluwer Academic/Plenum Publishers, New York.
  • Miller M.A., Pfeiffer W. & Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010: 1-8. New Orleans, Los Angeles. https://doi.org/10.1109/GCE.2010.5676129
  • Morrow C. & Cardenas P. 2015. Proposal for a revised classification of the Demospongiae (Porifera). Frontiers in Zoology 12 (7): 1-27. https://doi.org/10.1186/s12983-015-0099-8
  • NABIS 2017. Lamellomorpha strongylata Bergquist, 1968. Annual distribution of a Spirits Bay invertebrate complex lineage. Internet mapping of New Zealand's marine environment, species distributions and fisheries management. Available from: www.nabis.govt.nz [accessed 2 Feb. 2019].
  • Ronquist F., Teslenko M., van der Mark P., Ayres D.L., Darling A., Hohna S., Larget B., Liu L., Suchard M.A. & Huelsenbeck J.P. 2012. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space. Systematic Biology 61: 539-542. https://doi.org/10.1093/sysbio/sys029
  • SchusterA., Erpenbeck D., PiseraA., Hooper J.N.A., Bryce M.,Fromont J. &Worheide G.2015.Deceptive desmas: molecular phylogenetics suggests a new classification and uncovers convergent evolution of lithistid demosponges. PLoS ONE 10 (1): e116038. https://doi.org/10.1371/journal.pone.0116038
  • Schuster A., Cardenas P., Pisera A., Pomponi S.A., Kelly M., Worheide G. & Erpenbeck D. 2018. Seven new deep-water Tetractinellida (Porifera: Demospongiae) from the Galapagos Islands - morphological descriptions and DNA barcodes. Zoological Journal of the Linnaean Society 184: 273- 303. https://doi.org/10.1093/zoolinnean/zlx110
  • Sollas W.J. 1888. Report on the Tetractinellida collected by H.M.S. Challenger, during the years 1873- 1876. Report on the Scientific Results of the Voyage of H.M.S. Challenger, 1873-1876. Zoology 25 (63): 1-458.
  • Stamatakis A. 2014. RAxML Version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
  • Thacker R.W., Hill A.L., Hill M.S., Redmond N.E., Collins A.G., Morrow C.C., Spicer L., Carmack C.A., Zappe M.E., Pohlmann D., Hall C., Diaz M.C. & Bangalore P.V. 2013. Nearly Complete 28S rRNA Gene Sequences Confirm New Hypotheses of Sponge Evolution. Integrative and Comparative Biology 53: 373-387. https://doi.org/10.1093/icb/ict071
  • Ueoka R.,UriaA.R.,Reiter S.,Mori T., Karbaum P.,Peters E.E.,Helfrich E.J.N.,Morinaka B.I.,Gugger M., Takeyama H., Matsunaga S.& Piel J. 2015.Metabolic and evolutionary origin of actin-binding polyketides from diverse organisms. Nature Chemical Biology 11: 705-712. https://doi.org/10.1038/nchembio.1870
  • Wakimoto T., Egami Y., Nakashima Y., Wakimoto Y., Mori T., Awakawa T., Ito T., Kenmoku H., Asakawa Y., Piel J. & Abe I. 2014. Calyculin biogenesis from a pyrophosphate protoxin produced by a sponge symbiont. Nature Chemical Biology 10: 648-655. https://doi.org/10.1038/nchembio.1573
  • Wilson M.C., Mori T., Ruckert C., Uria A.R., Helf M.J., Takada K., Gernert C., Steffens U.A.E., Heycke N., Schmitt S., Rinke C., Helfrich E.J.N., Brachmann A.O., Gurgui C., Wakimoto T., Kracht M., Crusemann M., Hentschel U., Abe I., Matsunaga S., Kalinowski J., Takeyama H. & Piel J. 2014. An environmental bacterial taxon with a large and distinct metabolic repertoire. Nature 506: 58-62. https://doi.org/10.1038/nature12959