Published March 13, 2019
| Version 1.0.0
Dataset
Open
Genotypes, variants and pedigree from a human parent-offspring trio (NA12878)
Creators
- 1. Centre National de Recherche en Génomique Humaine (CNRGH), Institut de Biologie François Jacob, CEA, Université Paris-Saclay, F-91057, Evry, France
Description
This dataset includes whole genome sequencing data, produced at the French National Research Center for Human Genomics (CNRGH), with known pedigree information:
- The VCF file contains genotypes and variants from a CEU parent-offspring trio comprising NA12878 (child), NA12891 (father) and NA12892 (mother).
For each member, 150-bp paired-end whole genome sequencing data were generated on the Illumina HiSeq X system, from a PCR-free library (40x).
- The TFAM file contains pedigree information of this CEU parent-offspring trio.
Notes
This dataset supports the following paper, so please use this citation to cite this dataset:
E. Larsonneur, J. Mercier, N. Wiart, E. Le Floch, O. Delhomme and V. Meyer, "Evaluating Workflow Management Systems: A Bioinformatics Use Case," 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Madrid, Spain, 2018, pp. 2773-2775.
doi: 10.1109/BIBM.2018.8621141
Source: https://dx.doi.org/10.1109/BIBM.2018.8621141
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Additional details
Related works
- Compiles
- 10.1109/BIBM.2018.8621141 (DOI)