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widdowquinn/pyani: v0.2.8

Leighton Pritchard; Peter Cock; Özcan Esen; YT

This release implements several changes:

  • fixed warnings about deprecated usage of pandas and other syntax
  • ANIb now respects the --workers argument (PR #127 from Özcan Esen)
  • distance matrices are converted from square to condensed form for linkage analysis
  • matplotlib calls use new API ('false', 'off' -> False; 'true', 'on' -> True)
  • deprecate legacy BLAST testing: ANIblastall commands are no longer supported
  • update concordance tests (issue #105)
  • extend test suites (issue #104)
  • modify ANIm concordance test to accommodate new command structure
  • add delta-filter wrapper for compatibility with SGE/OGE schedulers

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