Dataset Open Access

Sample datasets for Transposon insertion sequencing analysis tutorial

Delphine Lariviere; Anton Nekrutenko

The dataset contains five files:

  1. Tnseq-Tutorial-reads.fastqsanger.gz  - A subset of TnSeq reads published in  `Santiago, M., Matano, L. M., Moussa, S. H., Gilmore, M. S., Walker, S., & Meredith, T. C. (2015). A new platform for ultra-high density Staphylococcus aureus transposon libraries. BMC Genomics, 16(1), 1–18. http://doi.org/10.1186/s12864-015-1361-3`
  2. condition_barcodes.fasta -  Set of barcodes to separate reads from different experimental conditions
  3. construct_barcodes.fasta  - Set of barcodes to separate reads from different transposon constructs
  4. staph_aur.fasta : Genome file for Staphylococcus aureus 
  5. staph_aur.fasta : Annotation file for Staphylococcus aureus 
Files (222.5 MB)
Name Size
condition_barcodes.fasta
md5:40f3729797b22cf80f2f182bb342e943
43 Bytes Download
construct_barcodes.fasta
md5:83ff71076679d3ddf8dc6a3909b10cf6
67 Bytes Download
staph_aur.fasta
md5:53d5b9cb9f985d0b92e56dd57a739f39
2.9 MB Download
staph_aur.gff3
md5:a9a14a2b0d11c83801367701354fce6a
1.9 MB Download
Tnseq-Tutorial-reads.fastqsanger.gz
md5:92ee21f7ed14002a61d115fb444cdf50
217.7 MB Download
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