(all datasets) MMETSP re-assemblies

Data from all MMETSP id combined into one file.

Transcriptome assembly fasta files: mmetsp_dib_trinity2.2.0_zenodo.tar.gz

Annotation gff files: mmetsp_dib_trinity2.2.0_gff_zenodo.tar.gz

Peptide translation fasta files: mmetsp_dib_trinity2.2.0_pep_zenodo.tar.gz

Salmon quantification files: mmetsp_dib_trinity2.2.0_quant_zenodo.tar.gz

The Marine Microbial Eukaryotic Transcriptome Sequencing Project (MMETSP) data set contains cultured samples of pelagic and endosymbiotic marine eukaryotic species representing more than 40 phyla (Keeling et al. 2014).

Methods for the de novo transcriptome assembly are described in the Eel pond khmer protocols (Brown et al. 2015).

Scripts available on github: 

https://github.com/dib-lab/dib-MMETSP

References:

C. Titus Brown, Camille Scott, and Leigh Sheneman. 2015. The Eel Pond mRNAseq Protocol. https://khmer-protocols.readthedocs.io/en/ctb/mrnaseq/

Keeling et al. 2014. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing. http://dx.doi.org/10.1371/journal.pbio.1001889