Published January 25, 2019 | Version v1
Dataset Open

Species abundance information improves sequence taxonomy classification accuracy - Qiita data

  • 1. Australian National University
  • 2. Northern Arizona University

Description

QIIME 2 Artifacts containing microbiome samples, organised by EMPO 3 classification.

Used to test q2-clawback.

Downloaded from Qiita. Draws from the following Qiita study ids:

11113[1], 11444, 1716, 10369[2], 990[3], 2080, 1713, 894, 1289, 1883, 1673, 1288, 10353, 2192[4], 10323, 678, 1773, 662, 1799, 864, 1481, 1024[5], 1064, 2182, 10934, 1674, 1795[6], 10273, 10283[7], 10422[8], 804, 10308, 1056[9], 2382[5], 1240, 889, 1041, 1717, 1222, 11149, 11669, 807[10], 10245, 1711, 1721, 910, 1001, 895, 550[11], 1747[12], 713[13], 755, 861, 958[14], 11161[15], 11154[16], 945, 723, 1715, 1714, 10798.

References
1. Schulfer, A. F. et al. Nat Microbiol 3, 234–242 (2017).
2. Ruhe, J. et al. Front Plant Sci 7 (2016).
3. O'Brien, S. L. et al. Environ Microbiol 18, 2039–2051 (2016).
4. Lax, S. et al. Science 345, 1048–1052 (2014).
5. Zarraonaindia, I. et al. mBio 6 (2015).
6. Navas-Molina, J. A. et al. in Methods Enzymol 371–444 (2013).
7. Fang, X. et al. Front Microbiol 9 (2018).
8. Tripathi, A. et al. mSystems 3 (2018).
9. Delsuc, F. et al. Mol Ecol 23, 1301–1317 (2013).
10. Gibbons, S. M. et al. PLoS ONE 9, e97435 (2014).
11. Caporaso, J. G. et al. Genome Biol 12, R50 (2011).
12. Hyde, E. R. et al. mSystems 1 (2016).
13. Brazelton, W. J., Nelson, B. & Schrenk, M. O. Front Microbiol 2 (2012).
14. Vitaglione, P. et al. Am J Clin Nutr 101, 251–261 (2014).
15. Spirito, C. M., Marzilli, A. M. & Angenent, L. T. Environ Sci Technol 52, 13438–13447 (2018).
16. Pham, V. T. H. et al. Sci Rep 7 (2017).

Files

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Additional details

Related works

Is supplement to
10.1101/406611 (DOI)