Biodiversity Literature Repository
Published December 31, 2015 | Version v1
Journal article Restricted

Concordance between molecular and morphology-based phylogenies of Korean Enhydrosoma (Copepoda: Harpacticoida: Cletodidae) highlights important synapomorphies and homoplasies in this genus globally

Creators

Description

Karanovic, Tomislav, Kim, Kichoon, Lee, Wonchoel (2015): Concordance between molecular and morphology-based phylogenies of Korean Enhydrosoma (Copepoda: Harpacticoida: Cletodidae) highlights important synapomorphies and homoplasies in this genus globally. Zootaxa 3990 (4): 451-496, DOI: 10.11646/zootaxa.3990.4.1

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

URL
https://www.checklistbank.org/dataset/39784
LSID
urn:lsid:zoobank.org:pub:90BE4EAF-8594-4164-AE26-4F47E04A4A5D
LSID
urn:lsid:plazi.org:pub:FFF7FFF9FFD0E65161172924FFFEE170
URL
http://publication.plazi.org/id/FFF7FFF9FFD0E65161172924FFFEE170

Cites
Publication: 10.1111/j.1463-6409.2010.00422.x (DOI)
Publication: 10.3354/meps214161 (DOI)
Publication: 10.1017/s002531540100337x (DOI)
Publication: 10.1163/20021975-99990320 (DOI)
Publication: 10.1080/10635150390235520 (DOI)
Publication: 10.1111/j.1096-3642.2012.00864.x (DOI)
Publication: 10.1098/rspb.2002.2218 (DOI)
Publication: 10.1016/j.ijpara.2011.10.009 (DOI)
Publication: 10.1016/j.ympev.2007.02.004 (DOI)
Publication: 10.1111/j.1095-8312.2005.00579.x (DOI)
Publication: 10.1016/j.ympev.2008.12.007 (DOI)
Publication: 10.1051/limn/2010021 (DOI)
Publication: 10.1163/ej.9789004181380.i-566.116 (DOI)
Publication: 10.1071/is11027 (DOI)
Publication: 10.1071/is12084 (DOI)
Publication: 10.1016/j.asd.2014.09.003 (DOI)
Publication: 10.11646/zootaxa.3783.1.1 (DOI)
Publication: 10.3897/zookeys.411.7346 (DOI)
Publication: 10.1051/limn/2011061 (DOI)
Publication: 10.1163/156854012x651709 (DOI)
Publication: 10.2988/0006-324X-127.1.248 (DOI)
Publication: 10.1007/bf01731581 (DOI)
Publication: 10.1007/s10709-006-9013-9 (DOI)
Publication: 10.1093/icb/43.3.439 (DOI)
Publication: 10.1016/j.ympev.2006.03.014 (DOI)
Publication: 10.1006/clad.1999.0121 (DOI)
Publication: 10.1093/bioinformatics/14.9.817 (DOI)
Publication: 10.1163/156854065x00631 (DOI)
Publication: 10.1163/156854079x00159 (DOI)
Publication: 10.1163/156854096x00826 (DOI)
Publication: 10.1093/molbev/mst197 (DOI)
Publication: 10.1093/nar/22.22.4673 (DOI)
Publication: 10.1017/s0080456800024017 (DOI)
Publication: 10.1111/j.1365-294x.2007.03480.x (DOI)
Has part
Taxonomic treatment: 10.5281/zenodo.5616522 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/03CE8781FFD3E64361802CC4FD2AE085 (URL)
Taxonomic treatment: 10.5281/zenodo.5616524 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/03CE8781FFC2E64B61802B63FB3EE4B7 (URL)
Taxonomic treatment: 10.5281/zenodo.5616528 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/03CE8781FFCAE67261802F28FAF1E2D5 (URL)
Dataset: http://table.plazi.org/id/DF18661FFFD4E65561602BBBFDF7E394 (URL)
Figure: 10.5281/zenodo.245657 (DOI)
Figure: 10.5281/zenodo.245658 (DOI)
Figure: 10.5281/zenodo.245659 (DOI)
Figure: 10.5281/zenodo.245660 (DOI)
Figure: 10.5281/zenodo.245661 (DOI)
Figure: 10.5281/zenodo.245662 (DOI)
Figure: 10.5281/zenodo.245663 (DOI)
Figure: 10.5281/zenodo.245664 (DOI)
Figure: 10.5281/zenodo.245665 (DOI)
Figure: 10.5281/zenodo.245666 (DOI)
Figure: 10.5281/zenodo.245667 (DOI)
Figure: 10.5281/zenodo.245668 (DOI)
Figure: 10.5281/zenodo.245669 (DOI)
Figure: 10.5281/zenodo.245670 (DOI)
Figure: 10.5281/zenodo.245671 (DOI)
Figure: 10.5281/zenodo.245672 (DOI)
Figure: 10.5281/zenodo.245673 (DOI)
Figure: 10.5281/zenodo.245674 (DOI)
Figure: 10.5281/zenodo.245675 (DOI)
Figure: 10.5281/zenodo.245676 (DOI)
Figure: 10.5281/zenodo.245677 (DOI)
Dataset: http://table.plazi.org/id/DF18661FFFF4E675618029BCFAA1E1BF (URL)
Figure: 10.5281/zenodo.245678 (DOI)
Figure: 10.5281/zenodo.245679 (DOI)
Dataset: http://table.plazi.org/id/DF18661FFFF7E676618029BCFE07E1BF (URL)
Is source of
Dataset: https://www.gbif.org/dataset/24cc56ce-ad34-420d-8586-5949e370de07 (URL)

References

  • Bell, S.S. & Kern, J.C. (1983) A new species of Enhydrosoma (Copepoda, Harpacticoida) from Tampa Bay, Florida. Florida Bulletin of Marine Science, 33, 899-904.
  • Blaha, M., Hulak, M., Sloukova, J. & Tesitel, J. (2010) Molecular and morphological patterns across Acanthocyclops vernalisrobustus species complex (Copepoda, Cyclopoida). Zoologica Scripta, 39, 259-268.
  • http://dx.doi.org/10.1111/j.1463-6409.2010.00422.x
  • Borutzky, E.W. (1928) Enhydrosoma uniarticulatum sp. nov. (Copepoda, Harpacticoida), ein neuer Vertreter der Gattung Enhydrosoma. Zoologischer Anzeiger, 80, 158-160.
  • Boxshall, G.A. & Halsey, S.H. (2004) An Introduction to Copepod Diversity. The Ray Society, London, 966 pp.
  • Burgess, R. (2001) An improved protocol for separating meiofauna from sediments using colloidal silica soils. Marine Ecology Progress Series, 214, 161-165.
  • http://dx.doi.org/10.3354/meps214161
  • Chislenko, L.L. (1978) New species of harpacticoid copepods (Copepoda, Harpacticoida) from Posyet Bay, Sea of Japan. Trudy Zoologicheskogo Instituta, Akademii Nauk SSSR, Leningrad, 61, 161-192. [in Russian]
  • Fiers, F. (1987) Enhydrosoma vervoorti spec. nov., a new harpacticoid copepod from India (Harpacticoida: Cletodidae). Zoologische Mededelingen, 61, 295-302.
  • Fiers, F. (1996) Re-description of Enhydrosoma lacunae Jakubisiak, 1933 (Copepoda, Harpacticoida), with comments on the Enhydrosoma species reported from West Atlantic localities, and a discussion of cletodid development. Sarsia, 81, 1-17.
  • Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenoek, R. (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit 1 from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294-299.
  • Gee, J.M. (1994) Towards a revision of Enhydrosoma Boeck, 1872 (Harpacticoida: Cletodidae sensu Por); a re-examination of the type species, E. curticauda Boeck, 1872, and the establishment of Kollerua gen. nov. Sarsia, 79, 83-107.
  • Gee, J.M. (2001) A reappraisal of the taxonomic position of Enhydrosoma curvirostre (Copepoda: Harpacticoida: Cletodidae). Journal of the Marine Biological Association of the United Kingdom, 81, 33-42.
  • http://dx.doi.org/10.1017/s002531540100337x
  • Gee, J.M. & Huys, R. (1996) An appraisal of the taxonomic position of Enhydrosoma buchholzi (Boeck, 1872), E. bifurcarostrum Shen & Tai, 1965, E. barnishi Wells, 1967 and E. vervoorti Fiers, 1987 with definition of two new genera (Copepoda, Harpacticoida, Cletodidae). Sarsia, 81, 161-191.
  • Glatzel, T. & Schminke, H.K. (1996) Mating behavior of the groundwater copepod Parastenocaris phyllura Kiefer, 1938 (Copepoda: Harpacticoida). Contributions to Zoology, 66, 103-108.
  • Goloboff, P. (1999) NONA (NO NAME) Version 2. Published by the author, Tucuman, Argentina.
  • Gomez, S. (2003) Three new species of Enhydrosoma and a new record of Enhydrosoma lacunae (Copepoda: Harpacticoida: Cletodidae) from the Eastern Tropical Pacific. Journal of Crustacean Biology, 23, 94-118.
  • http://dx.doi.org/10.1163/20021975-99990320
  • Gomez, S. (2004) A new species of Enhydrosoma Boeck, 1872 (Copepoda: Harpacticoida: Cletodidae) from Eastern Tropical Pacific. Proceedings of the Biological Society of Washington, 117, 529-540.
  • Guindon, S. & Gascuel, O. (2003) A simple, fast and accurate method to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704.
  • http://dx.doi.org/10.1080/10635150390235520
  • Hamrova, E., Krajicek, M., Karanovic, T., Cerny, M. & Petrusek, A. (2012) Congruent patterns of lineage diversity in two species complexes of planktonic crustaceans, Daphnia longispina (Cladocera) and Eucyclops serrulatus (Copepoda), in East European mountain lakes. Zoological Journal of the Linnean Society, 166, 754-767.
  • http://dx.doi.org/10.1111/j.1096-3642.2012.00864.x
  • Hebert, P.D.N., Cywinska, A., Ball, S.L. & deWaard, J.R. (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London, 270, 313-321.
  • http://dx.doi.org/10.1098/rspb.2002.2218
  • Huys, R. & Boxshall, G.A. (1991) Copepod Evolution. The Ray Society, London, 468 pp.
  • Huys, R., Fatih, F, Ohtsuka, S. & Llewellyn-Hughes, J. (2012) Evolution of the bomolochiform superfamily complex (Copepoda: Cyclopoida): New insights from ssrDNA and morphology, and origin of umazuracolids from polychaeteinfesting ancestors rejected. International Journal of Parasitology, 42, 71-92.
  • http://dx.doi.org/10.1016/j.ijpara.2011.10.009
  • Huys, R., Llewellyn-Hughes, J., Conroy-Dalton, S., Olson, P.D., Spinks, J. & Johnston, D.A. (2007) Extraordinary host switching in siphonostomatoid copepods and the demise of the Monstrilloida: integrating molecular data, ontogeny and antennulary morphology. Molecular Phylogenetics and Evolution, 43, 368-378.
  • http://dx.doi.org/10.1016/j.ympev.2007.02.004
  • Huys, R., Llewellyn-Hughes, J., Olson, P.D. & Nagasawa, K. (2006) Small subunit rDNA and Bayesian inference reveal Pectenophilus ornatus (Copepoda incertae sedis) as highly transformed Mytilicolidae, and support assignment of Chondracanthidae and Xarifiidae to Lichomolgoidea (Cyclopoida). Biological Journal of the Linnean Society, 87, 403- 425.
  • http://dx.doi.org/10.1111/j.1095-8312.2005.00579.x
  • Huys, R., MacKenzie-Dodds, J. & Llewellyn-Hughes, J. (2009) Cancrincolidae (Copepoda, Harpacticoida) associated with land crabs: a semiterrestrial leaf of the ameirid tree. Molecular Phylogenetics and Evolution, 51, 143-156. http://dx.doi.org/10.1016/j.ympev.2008.12.007
  • Karanovic, T. (2010) First record of the harpacticoid genus Nitocrellopsis (Copepoda, Ameiridae) in Australia, with descriptions of three new species. International Journal of Limnology, 46, 249-280.
  • http://dx.doi.org/10.1051/limn/2010021
  • Karanovic, T. & Cooper, S.J.B. (2011a) Molecular and morphological evidence for short range endemism in the Kinnecaris solitaria complex (Copepoda: Parastenocarididae), with descriptions of seven new species. Zootaxa, 3026, 1-64.
  • Karanovic, T. & Cooper, S.J.B. (2011b) Third genus of paratenocaridid copepods from Australia supported by molecular evidence (Copepoda, Harpacticoida). In: Defaye, D., Suarez-Morales, E. & von Vaupel Klein, J.C. (Eds.), Crustaceana Monographs, Studies on Freshwater Copepoda: a Volume in Honour of Bernard Dussart. Brill, Nevada, 293-337. http://dx.doi.org/10.1163/ej.9789004181380.i-566.116
  • Karanovic, T. & Cooper, S.J.B. (2012) Explosive radiation of the genus Schizopera on a small subterranean island in Western Australia (Copepoda : Harpacticoida): unravelling the cases of cryptic speciation, size differentiation and multiple invasions. Invertebrate Systematics, 26, 115-192.
  • http://dx.doi.org/10.1071/is11027
  • Karanovic, T., Eberhard, S.M., Perina, G. & Callan, S. (2013) Two new subterranean ameirids (Crustacea : Copepoda : Harpacticoida) expose weaknesses in the conservation of short-range endemics threatened by mining developments in Western Australia. Invertebrate Systematics, 27, 540-566.
  • http://dx.doi.org/10.1071/is12084
  • Karanovic, T. & Kim, K. (2014a) Suitability of cuticular pores and sensilla for harpacticoid copepod species delineation and phylogenetic reconstruction. Arthropod Structure & Development, 43, 615-658. http://dx.doi.org/10.1016/j.asd.2014.09.003
  • Karanovic, T. & Kim, K. (2014b) New insights into polyphyly of the harpacticoid genus Delavalia (Crustacea, Copepoda) through morphological and molecular study of an unprecedented diversity of sympatric species in a small South Korean bay. Zootaxa, 3783 (1), 1-96.
  • http://dx.doi.org/10.11646/zootaxa.3783.1.1
  • Karanovic, T., Kim, K. & Lee, W. (2014) Morphological and molecular affinities of two East Asian species of Stenhelia (Crustacea, Copepoda, Harpacticoida). ZooKeys, 411, 105-143.
  • http://dx.doi.org/10.3897/zookeys.411.7346
  • Karanovic, T. & Krajicek, M. (2012a) When anthropogenic translocation meets cryptic speciation globalised bouillon originates; molecular variability of the cosmopolitan freshwater cyclopoid Macrocyclops albidus (Crustacea: Copepoda). International Journal of Limnology, 48, 63-80.
  • http://dx.doi.org/10.1051/limn/2011061
  • Karanovic, T. & Krajicek, M. (2012b) First molecular data on the Western Australian Diacyclops (Copepoda, Cyclopoida) confirm morpho-species but question size differentiation and monophyly of the alticola -group. Crustaceana, 85, 1549- 1569.
  • http://dx.doi.org/10.1163/156854012x651709
  • Karanovic, T. & Lee, W. (2012) A new species of Parastenocaris from Korea, with a re-description of the closely related P. biwae from Japan (Copepoda: Harpacticoida: Parastenocarididae). Journal of Species Research, 1, 4-34.
  • Kikuchi, Y., Dai, A.-Y. & Ito, T. (1993) Three species of harpacticoids (Crustacea, Copepoda) from Lake Tai-Hu, eastern China. Publications of Itako Hydrobiological Station, 6, 17-25.
  • Kim, K., Trebukhova, Y., Lee, W. & Karanovic, T. (2014) A new species of Enhydrosoma (Copepoda: Harpacticoida: Cletodidae) from Korea, with re-description of E. intermedia and establishment of a new genus. Proceedings of the Biological Society of Washington, 127, 248-283.
  • http://dx.doi.org/10.2988/0006-324X-127.1.248
  • Kimura, M. (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
  • http://dx.doi.org/10.1007/bf01731581
  • Lang, K. (1936) Die Familie der Cletodidae, Sars, 1909. Zoologische Jahrbucher Systematik, 68, 445-480.
  • Lang, K. (1948) Monographie der Harpacticiden. 1-2. Nordiska Bokhandeln, Lund, 1682 pp.
  • Lang, K. (1965) Copepoda Harpacticoida from the Californian Pacific coast. Kungliga Svenska Vetenskapsakademiens Handlingar, 10, 1-560.
  • Lee, C.E., Remfert, J.L. & Chang, Y.-M. (2007) Response to selection and evolvability of invasive populations. Genetica, 129, 179-192.
  • http://dx.doi.org/10.1007/s10709-006-9013-9
  • Lee, C.E., Remfert, J.L. & Gelembiuk, G.W. (2003) Evolution of physiological tolerance and performance during freshwater invasions. Integrative and Comparative Biology, 43, 439-449.
  • http://dx.doi.org/10.1093/icb/43.3.439
  • Lefebure, T., Douady, C.J., Gouy, M. & Gibert, J. (2006) Relationship between morphological taxonomy and molecular divergence within Crustacea: Proposal of a molecular threshold to help species delimination. Molecular Phylogeny and Evolution, 40, 435-447.
  • http://dx.doi.org/10.1016/j.ympev.2006.03.014
  • Mielke, W. (1990) Zausodes septimus Lang, 1965 und Enhydrosoma pericoense nov. spec., zwei bentische Ruderfusskrebse (Crustacea, Copepoda) aus dem Eulitoral von Panama. Microfauna Marina, 6, 139-156.
  • Nixon, K.C. (1999) The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics, 15, 407-414. http://dx.doi.org/10.1006/clad.1999.0121
  • Nixon, K.C. (2002) WinClada version 1.00.0 8. Published by the author, Ithaca, New York.
  • Por, D. (1986) A re-evaluation of the family Cletodidae Sars, Lang, (Copepoda, Harpacticoida). In: Schriever, G., Schminke, H.K. & Shih, S.-T. (Eds.), Proceedings of the Second International Conference on Copepoda, Ottawa, Canada, 13-17th August 1984, Syllogeus, 58, 420-425.
  • Posada, D. & Crandall, K.A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817-818. http://dx.doi.org/10.1093/bioinformatics/14.9.817
  • Raibaut, A. (1965) Sur quelques Cletodidae (Copepoda, Harpacticoida) du Bassin de Thau. Crustaceana, 8, 113-120.
  • http://dx.doi.org/10.1163/156854065x00631
  • Ranga Reddy, Y. (1979) Enhydrosoma radhakrishnai n. sp. (Copepoda, Harpacticoida) from Lake Kolleru, South India. Crustaceana, 36, 9-14.
  • http://dx.doi.org/10.1163/156854079x00159
  • Sakaguchi, S.O. & Ueda, H. (2010) A new species of Pseudodiaptomus (Copepoda: Calanoida) from Japan, with notes on the closely related P. inopinus Burckhardt, 1913 from Kyushu Island. Zootaxa, 2612, 52-68.
  • Sars, G.O. (1909) An account of the Crustacea of Norway. Vol. 5. Harpacticoida. Bergen Museum, Bergen, 449 pp.
  • Stock, J.K. & von Vaupel Klein, J.C. (1996) Mounting media revisited: the suitability of Reyne's fluid for small crustaceans. Crustaceana, 69, 749-798.
  • http://dx.doi.org/10.1163/156854096x00826
  • Tamura, K. (1992) Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C-content biases. Molecular Biology and Evolution, 9, 678-687.
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution, 30, 2725-2729.
  • http://dx.doi.org/10.1093/molbev/mst197
  • Thompson, J.D., Higgins, D.G. & Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
  • http://dx.doi.org/10.1093/nar/22.22.4673
  • Walter, T.C. & Boxshall, G. (2015) World Copepoda database. Available from: http://www.marinespecies.org/copepoda (accessed on 10 January 2015)
  • Wells, J.B.J. (1967) The littoral Copepoda (Crustacea) of Inhaca Island, Mozambique. Transactions of the Royal Society of Edinburgh, 67,189-358.
  • http://dx.doi.org/10.1017/s0080456800024017
  • Wells, J.B.J. (2007) An annotated checklist and keys to the species of Copepoda Harpacticoida. Zootaxa, 1568, 1-872.
  • Winkler, G., Dodson, J.J. & Lee, C.E. (2008) Heterogeneity within the native range: population genetic analyses of sympatric invasive and noninvasive clades of the freshwater invading copepod Eurytemora affinis. Molecular Ecology, 17, 415-430. http://dx.doi.org/10.1111/j.1365-294x.2007.03480.x
  • Wyngaard, G.A., Holynska, M. & Schulte, J.A. II (2010) Phylogeny of the freshwater copepod Mesocyclops (Crustacea: Cyclopidae) based on combined molecular and morphological data, with notes on biogeography. Molecular Phylogenetics and Evolution, 55, 753-764.