Published December 20, 2018
| Version 1.2
Software
Open
adamewing/bamsurgeon 1.2
Creators
- 1. Mater Research Institute, University of Queensland
- 2. Genome Institute of Singapore
- 3. UPMC-CNRS
- 4. Northwestern University
- 5. @OpenGene
- 6. Broad Institute
- 7. Cancer Therapeutics Innovation Group
- 8. @hammerlab
Description
Features
Support snv and indel spikein to long noisy reads using minimap2 aligner
Support arbitrarily long insertions, deletions, and inversions
Support translocations in all possible orientations
Obey user input SV breakends exactly if possible, add option (--require_exact
) to enforce this
Option to adjust noise around SV breakpoints
Miscellaneous / Bugfixes Remove useless fraction-of-contig syntax from DEL type Improvements to indels in noisy reads
Files
adamewing/bamsurgeon-1.2.zip
Files
(117.6 MB)
Name | Size | Download all |
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Additional details
Related works
- Is supplement to
- https://github.com/adamewing/bamsurgeon/tree/1.2 (URL)