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Published December 20, 2018 | Version 1.2
Software Open

adamewing/bamsurgeon 1.2

  • 1. Mater Research Institute, University of Queensland
  • 2. Genome Institute of Singapore
  • 3. UPMC-CNRS
  • 4. Northwestern University
  • 5. @OpenGene
  • 6. Broad Institute
  • 7. Cancer Therapeutics Innovation Group
  • 8. @hammerlab

Description

Features Support snv and indel spikein to long noisy reads using minimap2 aligner Support arbitrarily long insertions, deletions, and inversions Support translocations in all possible orientations Obey user input SV breakends exactly if possible, add option (--require_exact) to enforce this Option to adjust noise around SV breakpoints

Miscellaneous / Bugfixes Remove useless fraction-of-contig syntax from DEL type Improvements to indels in noisy reads

Files

adamewing/bamsurgeon-1.2.zip

Files (117.6 MB)

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