Dataset Open Access

All simulated data for clonealign paper

Campbell, Kieran R

Organized across five simulation scenarios:

  1. sim-imbalance - robustness of method to different clonal frequencies
  2. sim-multi-clone - robustness to number of clones
  3. sim-vary-G - robustness to varying number of genes distringuishing clones
  4. sim-quality - robustness to varying quality of data (subsampling reads)
  5. sim-vary-prop-genes - robustness to varying proportion of genes with a dosage effect

Each directory has two sub directories:

  1. sces - collections of SingleCellExperiments where the filename corresponds to parameters used to generate (see Snakefile)
  2. fits - csv files holding both ground truth clones and inferred clones from all methods and parameter combinations

Files (853.2 MB)
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clonealign-paper-simulated-data.tar.gz
md5:f9e55c0c48c795a909785f827f52f41a
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