Journal article Open Access

Processed data for "clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers"

Campbell, Kieran R

Processed single-cell RNA-seq and single-cell DNA-seq (CNV) data for "clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers"

This tar.gz has the following directory structure:

"SA501" and "T_OV2295" directories indicate the experiment (SA501 PDX or OV2295 cell line). Within each are "10X" and "cnv" directories:

  • The 10X directories contain the CellRanger output (barcodes.tsv, genes.tsv, matrix.mtx) for each each sample
  • The cnv directory contains processed copy number calls for all single cells and aggregated to clone levels

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