Dataset Open Access
Lobet, Guillaume; Koevoets, Iko; Noll, Manuel; Tocquin, Pierre; Meyer, Patrick E; Pagès, Loic; Périlleux, Claire
This depository contains the images and associated RSML files used in the paper entitled "Using a structural root system model to evaluate and improve the accuracy of root image analysis pipelines" from the same authors.
It contains:
- 30.000 simulated root images of 10.000 different root systems, with different noise levels (0=null, 1=medium, 3=high);
- 10.000 corresponding RSML files;
- .csv files containing the ground-truth data for each modelled root system (500-data.csv);
- .csv files containing the image descriptors extracted using RIA-J (500-descriptors.csv);
The codes used to generate and analyse this dataset is available here: http://doi.org/10.5281/zenodo.208499
Note about the metrics computed from the RSML files (contained in 500-data.csv): the root systems were simulated in a constrained 2D space (rhizotron-like). Therefore, the RSML_reader plugin computed the lengths of the different roots in 2D only (despite the fact that a Z coordinate is present in the the RSML files).
CORRECTION: There is a scale issue in the 500-descriptors.csv file. "area" and "convexhull" columns values should be divided by 10
Name | Size | |
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500-data.csv
md5:ddccf7a952ae13c284d95a470a38f27f |
6.3 MB | Download |
500-descriptors.csv
md5:1e4ef09d8b651c89207985c6d30dd32d |
6.6 MB | Download |
fibrous_degradation_0.zip
md5:38684bf19c992ae641574fa46409fad4 |
1.7 GB | Download |
fibrous_degradation_1.zip
md5:baee281360cf3f1fa86f8586b40fd071 |
7.1 GB | Download |
fibrous_degradation_3.zip
md5:8d2015975f7214984e2b52816ed1c29d |
10.7 GB | Download |
fibrous_rsml.zip
md5:8022fa8d69e70b23c5a1e7947cc9252f |
384.1 MB | Download |
taproot_degradation_0.zip
md5:d8c94b03cff6dcb223127f718d0e8b65 |
662.8 MB | Download |
taproot_degradation_1.zip
md5:580f26b0eea78481bdd51cdb2edd9d8b |
4.3 GB | Download |
taproot_degradation_3.zip
md5:c00d4619878de069616d75d4c07a7db8 |
6.7 GB | Download |
taproot_rsml.zip
md5:ced235ba9f73b5117013a395f153d1b5 |
148.7 MB | Download |
All versions | This version | |
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Views | 588 | 590 |
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Data volume | 21.0 TB | 21.0 TB |
Unique views | 532 | 534 |
Unique downloads | 446 | 445 |