Dataset Open Access

Library of simulated root images, with different noise levels

Lobet, Guillaume; Koevoets, Iko; Noll, Manuel; Tocquin, Pierre; Meyer, Patrick E; Pagès, Loic; Périlleux, Claire

This depository contains the images and associated RSML files used in the paper entitled "Using a structural root system model to evaluate and improve the accuracy of root image analysis pipelines" from the same authors.

 

It contains: 

- 30.000 simulated root images of 10.000 different root systems, with different noise levels (0=null, 1=medium, 3=high);

- 10.000 corresponding RSML files;

- .csv files containing the ground-truth data for each modelled root system (500-data.csv);

- .csv files containing the image descriptors extracted using RIA-J (500-descriptors.csv);

 

The codes used to generate and analyse this dataset is available here: http://doi.org/10.5281/zenodo.208499

Note about the metrics computed from the RSML files (contained in 500-data.csv): the root systems were simulated in a constrained 2D space (rhizotron-like). Therefore, the RSML_reader plugin computed the lengths of the different roots in 2D only (despite the fact that a Z coordinate is present in the the RSML files). 

Files (31.6 GB)
Name Size
500-data.csv md5:ddccf7a952ae13c284d95a470a38f27f 6.3 MB Download
500-descriptors.csv md5:1e4ef09d8b651c89207985c6d30dd32d 6.6 MB Download
fibrous_degradation_0.zip md5:38684bf19c992ae641574fa46409fad4 1.7 GB Download
fibrous_degradation_1.zip md5:baee281360cf3f1fa86f8586b40fd071 7.1 GB Download
fibrous_degradation_3.zip md5:8d2015975f7214984e2b52816ed1c29d 10.7 GB Download
fibrous_rsml.zip md5:8022fa8d69e70b23c5a1e7947cc9252f 384.1 MB Download
taproot_degradation_0.zip md5:d8c94b03cff6dcb223127f718d0e8b65 662.8 MB Download
taproot_degradation_1.zip md5:580f26b0eea78481bdd51cdb2edd9d8b 4.3 GB Download
taproot_degradation_3.zip md5:c00d4619878de069616d75d4c07a7db8 6.7 GB Download
taproot_rsml.zip md5:ced235ba9f73b5117013a395f153d1b5 148.7 MB Download

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