Release 2.0.1 - synced with PeerJ ReLocaTE2 revision

We have developed the tool RelocaTE2 (http://github.com/stajichlab/RelocaTE2) for identification of TE insertion sites at high sensitivity and specificity. RelocaTE2 searches for known TE sequences in whole genome sequencing reads from second generation sequencing platforms such as Illumina. These sequence reads are used as seeds to pinpoint chromosome locations where TEs have transposed. RelocaTE2 detects target site duplication (TSD) of TE insertions allowing it to report TE polymorphism loci with single base pair precision.