Published December 7, 2018 | Version v0.1
Software Open

hasindu2008/minimap2-arm: long read alignment using partitioned reference indexes

Creators

  • 1. Broad Institute
  • 2. Embedded Systems Lab, UNSW
  • 3. Oxford Nanopore Technologies
  • 4. Wellcome Trust Sanger Institute
  • 5. University of Helsinki

Description

An extended version of minimap2 with better support for partitioned reference indexes. Used for citation in the paper "long read alignment using partitioned reference indexes".

  • command line option --multi-prefix
  • idxtools for efficient partition index construction
  • readme for idxtools
  • evaluation scripts and programs

Files

hasindu2008/minimap2-arm-v0.1.zip

Files (273.1 kB)

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Additional details

Related works

Is supplement to
https://github.com/hasindu2008/minimap2-arm/tree/v0.1 (URL)