Published December 31, 2010
| Version v1
Journal article
Restricted
Mitochondrial DNA and morphometrical identification of a new species of Hylomyscus (Rodentia: Muridae) from West Africa
Description
Nicolas, Violaine, Olayemi, Ayodejii, Wendelen, Wim, Colyn, Marc (2010): Mitochondrial DNA and morphometrical identification of a new species of Hylomyscus (Rodentia: Muridae) from West Africa. Zootaxa 2579: 30-44, DOI: 10.5281/zenodo.197565
Files
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:D60CFB3BFF95FF84FFB1FF86BB69FFE2
- URL
- http://publication.plazi.org/id/D60CFB3BFF95FF84FFB1FF86BB69FFE2
References
- Avise, J.C. (2000) Phylogeography: the history and formation of species. Harvard University press, Cambridge, 447 pp.
- Avise, J.C., Shapiro, J.F., Daniel, S.W., Aquadro, C.F. & Lansman, R.A. (1983) Mitochondrial DNA differentiation during the speciation process in Peromyscus. Molecular Biology and Evolution, 1, 38-56.
- Barome, P.O., Monnerot, M. & Gautun, J.C. (1998) Intrageneric phylogeny of Acomys (rodentia, muridae) using mitochondrial gene cytochrome b. Molecular Phylogenetics and Evolution, 9, 560-6.
- Bradley, R.D. & Baker, A. (2001) A test of the genetic species concept: cytochrome- b sequences and mammals. Journal of Mammalogy, 82, 960-973.
- Burk, A., Douzery, E.J.p. & Springer, M.S. (2002) The secondary structure of mammalian mitochondrial 16S rRNA molecules: refinements based on a comparative phylogenetic approach. Journal of Mammalian Evolution, 9, 225- 252.
- Carleton, M.D., Kerbis Peterhans, J.C. & Stanley, W.T. (2006) Review of the Hylomyscus denniae group (Rodentia: Muridae) in Eastern Africa, with comments on the generic allocation of Epimys endorobae Heller. Proceedings of the Biological Society of Washington, 119, 293.
- Carleton, M.D. & Stanley, W.T. (2005) Review of the Hylomyscus denniae complex (Rodentia: Muridae) in Tanzania, with a description of a new species. Proceedings of the Biological Society of Washington, 118, 619-646.
- Colyn, M. & Deleporte, P. (2002) Biogeographic analysis of Central African forest guenons. In: Colyn, M. & Deleporte, P. (Eds.)
- Colyn, M., Gautier-Hion, A. & Verheyen, W. (1991) A re-appraisal of palaeoenvironmental history in Central Africa: evidence for a major fluvial refuge in the Zaire Basin. Journal of Biogeography, 18, 403-407.
- Costa, L.P. (2003) The historical bridge between the Amazon and the Atlantic Forest of Brazil: a study of molecular phylogeography with small mammals. Journal of Biogeography, 30, 71-86.
- de Queiroz, K. (1998) The general lineage concept of species, species criteria and the process of speciation. A conceptual unification and terminological recommendations. In: Howard, D.J. & Berlocher, S.H. (Eds.) Endless forms: species and speciation. Oxford University Press, Oxford, pp. 57-75.
- Deleporte, P. & Colyn, M. (1999) Biogeographie et dynamique de la biodiversite: application de la PAE aux forets planitiaires d'Afrique centrale. Biosystema, 17, 37-43.
- Ducroz, J.F., Volobouev, V. & Granjon, L. (2001) An assessment of the systematics of Arvicanthine rodents using mitochondrial DNA sequences: evolutionary and biogeographical implications. Journal of Mammalian Evolution, 8, 173-206.
- Dupont, L.M., Jahns, S., Marret, F. & Ning, S. (2000) Vegetation change in equatorial West Africa: time-slices for the last 150 ka. Palaeogeography, Palaeoclimatology, Palaeoecology, 155, 95-122.
- Dupont, L.M. & Weinelt, M. (1996) Vegetation history of the savanna corridor between the Guinean and the Congolian rain forest during the last 150,000 years. Vegetation History and Archaeobotany, 5, 273-292.
- Ern, H. (1988) Flora and vegetation of the Dahomey-Gap - A contribution to the plant geography of West tropical Africa. Monographs in Systematic Botany from the Missouri Botanical Garden, 25, 517-520.
- Ferguson, J.W. (2002) On the use of genetic divergence for identifying species. Biological Journal of the Linnean Society, 75, 509-516.
- Grubb, P. (1990) Primate geography in the Afro-tropical forest biome. In: Peters, G. & Hutterer, R. (Eds.) Vertebrates in the tropics. Museum Alexander Koenig, Bonn, pp. 187-214.
- Guindon, S. & Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704.
- Guindon, S., Lethiec, F., Duroux, P. & Gascuel, O. (2005) PHYML Online- a web server for fast maximum likelihoodbased phylogenetic inference. Nucleic Acids Research, 33, W557-9.
- Hall, J.B. & Swaine, M.D. (1981) Distribution and Ecology of vascular plants in a tropical rain forest, Forest Vegetation in Ghana. Dr W. Junk Publishers, The Hague-Boston-London, 392 pp.
- Happold, D.C.D. (1996) Mammals of the Guinea-Congo rainforest. In: Alexander, I.J., Swaine, M.D. & Watling, R. (Eds.) Essays on the ecology of the Guinea-Congo rain forest, 243-284.
- Harris, D., Rogers, D.S. & Sullivan, J. (2000) Phylogeography of Peromyscus furvus (Rodentia; muridae) based on cytochrome b sequence data. Molecular ecology, 9, 2129-35.
- Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754- 5.
- Johns, G.C. & Avise, J.C. (1998) A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Molecular Biology and Evolution, 15, 1481-90.
- Klecka, W.R. (1980) Discriminant analysis. Sage Publications, London,pp.
- Kocher, T.D., Thomas, W.K., Meyer, A., Edwards, S.V., Paabo, S., Villablanca, F.X. & Wilson, A.C. (1989) Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the United States of America, 86, 6196-200.
- Lecompte, E., Granjon, L., Peterhans, J.K. & Denys, C. (2002) Cytochrome b-based phylogeny of the Praomys group (Rodentia, Murinae): a new African radiation? Comptes Rendus Biologies, 325, 827-40.
- Maddison, W.P. (1997) Gene trees in species trees. Systematic Biology 46, 523-536.
- Maley, J. (1991) The African rain forest vegetation and palaeoenvironments during late quaternary. Climatic Change, 19, 79-98.
- Maley, J. (1996) The African rain forest - main characteristics of changes in vegetation and climate from the Upper Cretaceous to the Quaternary. Proceedings of the Royal Society of Edinburgh, 104B, 31-73.
- Maley, J. (2001) The impact of arid phases on the African rain forest through geological history. In: Weber, W., White, L., Vedder, A. & Naughton-Treves, L. (Eds.) African rain forest ecology and conservation. Yale University Press68-87.
- Mayaux, P., Bartholome, E., Fritz, S. & Belward, A. (2004) A new land-cover map of Africa for the year 2000. Journal of Biogeography, 31, 861.
- Missoup, A.D., Nicolas, V., Wendelen, W., Bilong Bilong, C.F., Cruaud, C. & Denys, C. (2009) First record of Hylomyscus walterverheyeni on the north-western side of the Sanaga River (western Cameroon). Zootaxa, 2004, 46- 60.
- Moore, W.S. (1995) Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution, 49, 718-726.
- Mouline, K., Granjon, L., Galan, M., Tatard, C., Abdoullaye, D., Ag Atteyine, S., Duplantier, J.M. & Cosson, J.F. (2008) Phylogeography of a Sahelian rodent species Mastomys huberti: a Plio-Pleistocene story of emergence and colonization of humid habitats. Molecular Ecology, 17, 1036-53.
- Musser, G.G. & Carleton, M.D. (2005) Superfamily Muroidea. In: Wilson, D.E. & Reeder, D.M. (Eds.) Mammal species of the world: a taxonomic and geographic reference. The Johns Hopkins University Press, Baltimore, pp. 894-1531.
- Nicolas, V. & Colyn, M. (2003) Seasonal variations in population and community structure of small rodents in a tropical forest of Gabon. Canadian Journal of Zoology, 81, 1034-1046.
- Nicolas, V., Querouil, S., Verheyen, E., Verheyen, W., Mboumba, J.F., Dillen, M. & Colyn, M. (2006) Mitochondrial phylogeny of African wood mice, genus Hylomyscus (Rodentia, Muridae): implications for their taxonomy and biogeography. Molecular Phylogenetics and Evolution, 38, 779-93.
- Nicolas, V., Verheyen, E., Verheyen, W., Hulselmans, J., Dillen, M., Akpatou, B., Dudu, A., Wendelen, W. & Colyn, M. (2005) Systematics of African lowland rainforest Praomys (Rodentia, Muridae) based on molecular and craniometrical data. Zoological Journal of the Linnean Society, 145, 539-553.
- Nicolas, V., Wendelen, W., Barriere, P., Dudu, A. & Colyn, M. (2008) Morphometrical variation in Hylomyscus alleni and Hylomyscus stella (Rodentia, Muridae), and description of a new species. Journal of Mammalogy, 89, 222-231.
- Palumbi, S.R., Martin, A., Romano, S., McMillan, W.O., Stice, L. & Grabowski, G. (1991) The Simple Fool's Guide to PCR. University of Hawaii Press, Honolulu,pp.
- Pamilo, P. & Nei, M. (1988) Relationships between gene trees and species trees. Molecular Biology and Evolution 5, 568-583.
- Peppers, L.L. & Bradley, R.D. (2000) Cryptic species in Sigmodon hispidus: evidence from DNA sequences. Journal of Mammalogy, 81, 332-343.
- Posada, D. & Crandall, K.a. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
- Querouil, S., Hutterer, R., Barriere, P., Colyn, M., Peterhans, J.C.K. & Verheyen, E. (2001) Phylogeny and evolution of African shrews (Mammalia: Soricidae) inferred from 16s rRNA sequences. Molecular Phylogenetics and Evolution, 20, 185-195.
- Robbins, L.W., Choate, J.R. & Robbins, R.L. (1980) Nongeographic and interspecific variation in four species of Hylomyscus (Rodentia: Muridae) in Southern Cameroon. Annals of Carnegie Museum, 49, 31-48.
- Robert, C. & Chamley, H. (1987) Cenozoic evolution of continental humidity and paleoenvironment, deduced from kaolinite content of oceanic sediments. Palaeogeography, Palaeoclimatology and Palaeoecology, 60, 171-187.
- Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-4.
- Ronquist, F., Huelsenbeck, J.P. & Van der Mark, P. (2005) MrBayes 3.1 Manual. In: http://mrbayes.csit.fsu.edu/
- Rosevear, D. (1969) The Rodents of West Africa. Trustees of the British Museum (Natural History), London, 418 pp.
- Rosevear, D.R. (1966) The subgenus Hylomyscus Thomas in West Africa. 30, 13-24. Salzmann, U. & Hoelzmann, P. (2005) The Dahomey Gap: an abrupt climatically induced rain forest fragmentation in West Africa during the late Holocene. The Holocene, 15, 190-199.
- Slatkin, M. & Maddison, W.P. (1989) A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics, 123, 603-13.
- Statsoft, I. (2001) STATISTICA (data analysis software system), version 6. www.statsoft.com
- Thompson, J.D., Higgins, D.G. & Gibson, T.J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position- speciWc gap penalties, and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
- Winnepenninckx, B., Backeljau, T. & De Wachter, R. (1993) Extraction of high molecular weight DNA from molluscs. Trends in Genetics, 9, 407.