Published December 31, 2009 | Version v1
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Molecular phylogeny, classification, and biogeography of West Indian racer snakes of the Tribe Alsophiini (Squamata, Dipsadidae, Xenodontinae)

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Hedges, Blair, Couloux, Arnaud, Vidal, Nicolas (2009): Molecular phylogeny, classification, and biogeography of West Indian racer snakes of the Tribe Alsophiini (Squamata, Dipsadidae, Xenodontinae). Zootaxa 2067: 1-28, DOI: 10.5281/zenodo.187018

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References

  • (1965). Tooth counts are from Maglio (1970) and do not include all species; maxillary teeth include the two teeth
  • Auge, M. & Rage, J.-C. (2000) Les Squamates (Reptilia) du Miocene moyen de Sansan. Memoires du Museum National d'Histoire Naturelle, 183, 263-313.
  • Barbour, T., & Ramsden, C.T. (1919) The Herpetology of Cuba. Memoirs of the Museum of Comparative Zoology, 47, 71-213.
  • Bibron, G. (1840) Plate 27. In: de la Sagra, R., Historia fisica, politica y natural de la Isla de Cuba. Arthus Bertrand, Paris.
  • Boulenger, G.A. (1893) Catalogue of snakes in the British Museum (Natural History). Vo l . 1 , Longmans and Company, London, 448 pp.
  • Breuil, M. (2002) Histoire naturelle des amphibiens et reptiles terrestres de l'archipel Guadeloupeen. Museum National d'Histoire Naturelle, Paris, 339 pp.
  • Burbrink, F.T. & Pyron, R.A. (2008) The taming of the skew: Estimating proper confidence intervals for divergence dates. Systematic Biology, 57, 317-328.
  • Burbrink, F.T., Lawson, R. & Slowinski, J.B. (2000) Mitochondrial DNA phylogeography of the polytypic North American ratsnake (Elaphe obsoleta): a critique of the subspecies concept. Evolution, 54, 2107-2118.
  • Cadle, J.E. (1984) Molecular systematics of xenodontine colubrid snakes: I. South American xenodontines. Herpetologica, 40, 8-20.
  • Cadle, J.E. (1985) The Neotropical colubrid snake fauna: lineage components and biogeography. Systematic Zoology, 34, 1-20.
  • Cadle, J.E. & Greene, H.W. (1993) Phylogenetic patterns, biogeography, and the ecological structure of Neotropical snake assemblages. In: Ricklefs, R.E. & Schluter, D. (Eds.), Species diversity in ecological communities: historical and geographical perspectives. University of Chicago Press, Chicago, pp. 281-293.
  • Carlquist, S. (1965) Island life. A natural history of the islands of the World. Natural History Press, Garden City, New York, 451 pp.
  • Cochran, D.M. (1941) The herpetology of Hispaniola. Bulletin of the U.S. National Museum, 177, 1-398.
  • Cope, E.D. (1862 [1863]) Synopsis of the species of Holcosus and Ameiva, with diagnoses of new West Indian and South American Colubridae. Proceedings of the Academy of Natural Sciences, Philadelphia, 14, 60-82.
  • Crother, B.I. (1999) Phylogenetic relationships among West Indian xenodontine snakes (Serpentes; Colubridae) with comments on the phylogeny of some mainland xenodontines. Contemporary Herpetology, 1999, 1-21. Available: http://www.contemporaryherpetology.org/ch/1999/2/index.htm
  • Crother, B.I. & Hillis, D.M. (1995) Nuclear ribosomal DNA restriction sites, phylogenetic information, and the phylogeny of some xenodontine (Colubridae) snakes. Journal of Herpetology, 29, 316-320.
  • De Queiroz, A., Lawson, R. & Lemos-Espinal, J.A. (2002) Phylogenetic relationships of North American garter snakes (Thamnophis) based on four mitochondrial genes: how much DNA sequence is enough? Molecular Phylogenetics and Evolution, 22, 315-329.
  • Donovan, S.K. (2002) A karst of thousands: Jamaica's limestone scenery. Geology Today, 18, 143-151.
  • Dowling, H.G. (1975) A provisional classification of snakes. In: Dowling, H. G. (Ed.), 1974 yearbook of herpetology. Herpetological Information Search Systems, The American Museum of Natural History, New York, pp. 167-170.
  • Dumeril, A.M.C., & Bibron, G. (1853) Prodrome de la classification des reptiles ophidiens. Memoires de l'Academie des Sciences de l'Institut de France, 23, 478.
  • Dunn, E.R. (1932) The colubrid snakes of the Greater Antilles. Copeia, 1932, 89-92.
  • Fitzinger, L. (1843) Systema reptilium. Braumuller et Seidel Bibliopolas, Wien, 106 pp.
  • Forstner, M.R.J., Davis, S.K. & Arevalo, E. (1995) Support for the hypothesis of anguimorph ancestry for the suborder Serpentes from phylogenetic analysis of mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 4, 93-102.
  • Gosse, P.H. (1851) A Naturalist's Sojurn in Jamaica. Longman, Brown, Green and Longmans, London. 508 pp.
  • Grant, C. (1940) The herpetology of the Cayman Islands. Bulletin of the Institute of Jamaica, 2, 1-65.
  • Grant, C., Smith, H. M., & Alayo, P. (1959) The status of the snakes of the genus Arrhyton in Cuba. Herpetologica, 15, 129-133.
  • Gunther, A. (1858) Catalogue of colubrine snakes of the British Museum. British Museum, London, 281 pp.
  • Hall, T.A. (1999) Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symposium Series, 41, 95-98.
  • Hass, C.A., Maxson, L.R. & Hedges, S.B. (2001) Relationships and divergence times of West Indian amphibians and reptiles: insights from albumin immunology. In: Woods, C.A. & Sergile, F.E. (Eds.), Biogeography of the West Indies: patterns and perspectives. CRC Press, Boca Raton, Florida, pp. 157-174.
  • Hedges, S.B. (1994) Molecular evidence for the origin of birds. Proceedings of the National Academy of Sciences USA, 91, 2621-2624.
  • Hedges, S.B. (1996a) Historical biogeography of West Indian vertebrates. Annual Review of Ecology and Systematics, 27, 163-196.
  • Hedges, S.B. (1996b) The origin of West Indian amphibians and reptiles. In: Powell, R. & Henderson, R.W. (Eds.), Contributions to West Indian herpetology: a tribute to Albert Schwartz. Society for the Study of Amphibians and Reptiles. Ithaca, New York, pp. 95-128.
  • Hedges, S.B. (2001) Caribbean biogeography: an outline. In: Woods, C.A., & Sergile, F.E. (Eds.), Biogeography of the West Indies: Patterns and Perspectives. CRC Press, Boca Raton, Florida, pp. 15-33.
  • Hedges, S.B. (2002) Morphological variation and the definition of species in the snake genus Tropidophis (Tropidophiidae). Bulletin of Natural History Museum (London), Zoology Series, 68, 83-90.
  • Hedges, S.B. (2006) Paleogeography of the Antilles and origin of West Indian terrestrial vertebrates. Annals of the Missouri Botanical Garden, 93, 231-244.
  • Hedges, S.B. & Garrido, O.H. (1992) Cuban snakes of the genus Arrhyton: two new species and a reconsideration of A. redimitum Cope. Herpetologica, 48, 168-177.
  • Hedges, S.B., Hass, C.A. & Maxson, L.R. (1992) Caribbean biogeography: molecular evidence for dispersal in West Indian terrestrial vertebrates. Proceedings of the National Academy of Sciences USA, 89, 1909-1913.
  • Heinicke, M.P., Duellman, W.E. & Hedges, S.B. (2007) Major Caribbean and Central American frog faunas originated by oceanic dispersal. Proceedings of the National Academy of Sciences USA, 104, 10092-10097.
  • Henderson, R.W. (1984) The diets of Hispaniolan colubrid snakes. 1. Introduction and prey genera. Oecologia, 62, 234-239.
  • Henderson, R.W. (1990) A new subspecies of Alsophis antiguae (Parker) from Great Bird Island (Antigua), Lesser Antilles. Caribbean Journal of Science, 25, 119-122.
  • Henderson, R.W. (1992) Consequences of predator introductions and habitat destruction on amphibians and reptiles in the post-Columbus West Indies. Caribbean Journal of Science. 28, 1-10.
  • Henderson, R.W. & Powell, R. (1996) Alsophis ater. Catalogue of American Amphibians and Reptiles, 633, 1-2.
  • Henderson, R.W. & Powell, R. (1996) Alsophis sanctaecrucis. Catalogue of American Amphibians and Reptiles, 634, 1-2.
  • Henderson, R.W., Powell, R., Daltry, J.C. & Day, M.L. (1996) Alsophis antiguae. Catalogue of American Amphibians and Reptiles, 632, 1-3.
  • Henderson, R.W. & Sajdak, R.A. (1996) Diets of West Indian racers (Colubridae: Alsophis): Composition and biogeographic implications. In: Powell, R. & Henderson, R.W. (Eds.), Contributions to West Indian herpetology: a tribute to Albert Schwartz. Society for the Study of Amphibians and Reptiles. Ithaca, New York, pp. 327-338.
  • Henderson, R.W., Schwartz, A. & Noeskehallin, T.A. (1987) Food habits of three colubrid tree snakes (Genus Uromacer) on Hispaniola. Herpetologica, 43, 241-248.
  • Horn, H.S. (1969) Polymorphism and evolution of the Hispaniola snake genus Uromacer (Colubridae). Breviora, Museum of Comparative Zoology, 324, 1-23.
  • Hower, L.M. & Hedges, S.B. (2003) Molecular phylogeny and biogeography of West Indian teiid lizards of the genus Ameiva. Caribbean Journal of Science, 39, 298-306.
  • Iturralde-Vinent, M.A. & MacPhee, R.D.E. (1999) Paleogeography of the Caribbean region: implications for Cenozoic biogeography. Bulletin of the American Museum of Natural History, 238, 1-95.
  • IUCN (2008) IUCN Redlist of Threatened Species. Available from http://www.iucnredlist.org/ (accessed 21 December 2008).
  • Knight, A. & Mindell, D.P. (1994) On the phylogenetic relationships of Colubrinae, Elapidae and Viperidae and the evolution of front fanged venom systems in snakes. Copeia, 1994, 1-9.
  • Kocher, T.D., Thomas, W.K., Meyer, A., Edwards, S.V., Paabo, S., Villablanca, F.X. & Wilson, A.C. (1989) Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences USA, 86, 6196-6200.
  • Kumazawa, Y., Ota, H., Nishida, M. & Ozawa, T. (1996) Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster. Molecular Biology and Evolution, 13, 1242-1254.
  • Lazell, J.D., Jr. (1967) Wiederentdeckung von zwei angeblich ausgestorbenen Schlangenarten der westindischen Inseln. Salamandra, 3, 91-97.
  • Lynn, W. G., & Grant, C. (1940) The Herpetology of Jamaica. Bulletin of the Institute of Jamaica, Science Series, 1, 1-148.
  • Maglio, V.J. (1970) West Indian xenodontine colubrid snakes: their probable origin, phylogeny, and zoogeography. Bulletin of the Museum of Comparative Zoology, 141, 1-54.
  • Mitchell, S.F. (2004) Lithostratigraphy and palaeogeography of the White Limestone Group. Cainozoic Research, 3, 5-30.
  • Myers, C.W. (1973) A new genus for Andean snakes related to Lygophis boursieri and a new species (Colubridae). American Museum Novitates, 2522, 1-37.
  • Palumbi, S.R., Martin, A., Romano, S., Mcmillan, W.O., Stice, L. & Grabowski, G. (1991) The simple fool's guide to P.C . R . , Univ. of Hawaii Press, Honolulu, 43 pp.
  • Parker, H.W. (1933) Some amphibians and reptiles from the Lesser Antilles. Annals of the Magazine of Natural History, 11, 151-158.
  • Peters, W.C.H. (1863) Uber einige neue oder weniger bekannte Schlangenarten des zoologischen Museums zu Berlin. Monatsbericht Koniglich Preussischen Akademie der Wissenschaften zu Berlin, 1863, 272-289.
  • Philippe, H. (1993) MUST2000: a computer package of management utilities for sequences and trees. Nucleic Acids Research, 21, 5264-5272.
  • Pinou, T., Vicario, S., Marschner, M. & Caccone, A. (2004) Relict snakes of North America and their relationships within caenophidia, using likelihood-based Bayesian methods on mitochondrial sequences. Molecular Phylogenetics and Evolution, 32, 563-574.
  • Posada, D. & Crandall, K.A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
  • Powell, R. & Henderson, R.W. (1994) Ialtris. Catalogue of American Amphibians and Reptiles, 590, 1-2.
  • Powell, R. & Henderson, R.W. (1998) Alsophis anomalus. Catalogue of American Amphibians and Reptiles, 659, 1-2.
  • Powell, R. & Henderson, R.W. (1998) Alsophis melanichnus. Catalogue of American Amphibians and Reptiles, 660, 1-2.
  • Powell, R., Henderson, R.W., Adler, K. & Dundee, H.A. (1996) An annotated checklist of West Indian amphibians and reptiles. In: Powell, R. & Henderson, R.W. (Eds.), Contributions to West Indian Herpetology: a tribute to Albert Schwartz. Society for the Study of Amphibians and Reptiles, S.S.A.R., Ithaca, New York, pp. 51-93.
  • Reinhardt, J. & Lutken, C.F. (1862) Bidrag tii det vestindiske Origes og navnligen tii de dansk-vestindiske Oers Herpetologie. Vidensk. Meddel. Naturhist. For. Kjobenhavn, 153-291.
  • Ronquist, F. & Huelsenbeck, J.P. (2003) Mr Bayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
  • Rosen, D.E. (1975) A vicariance model of Caribbean biogeography. Systematic Zoology, 24, 431-464.
  • Ruibal, R. (2003) Introduction. In: Barbour, T. & C. T. Ramsden, The herpetology of Cuba. Facsimile Reprints in Herpetology, Society for the Study of Amphibians and Reptiles, Ithaca, New York, pp. iii-vii.
  • Schlegel, H. (1837) Essai sur la physionomie des serpens. Kips et van Stockum, La Haye, The Netherlands, 606 pp.
  • Schmidt, K.P. (1926) The amphibians and reptiles of Mona Island, West Indies. Field Museum Natural History Series, 12, 149-163.
  • Schwartz, A. (1966) Snakes of the genus Alsophis in Puerto Rico and the Virgin Islands. Studies on the Fauna of Curacao and Other Caribbean Islands, 90, 177-227.
  • Schwartz, A. (1967) A review of the genus Dromicus in Puerto Rico and the Virgin Islands. Stahlia, 9, 1-14.
  • Schwartz, A. (1970) A systematic review of Uromacer catesbyi Schlegel (Serpentes, Colubridae). Tulane Studies in Zoology and Botany, 16, 131-149.
  • Schwartz, A. (1971) A systematic review of the Hispaniolan snake genus Hypsirhynchus. Studies on the Fauna of Curacao and Other Caribbean Islands, 128, 63-94.
  • Schwartz, A. (1976) Variation in the Hispaniola colubrid snake Uromacer frenatus Gunther (Reptilia, Serpentes, Colubridae). Journal of Herpetology, 10, 319-327.
  • Schwartz, A. & Garrido, O.H. (1981) A review of the Cuban members of the genus Arrhyton (Reptilia, Serpentes, Colubridae). Annals of the Carnegie Museum of Natural History, 50, 207-230.
  • Schwartz, A. & Henderson, R.W. (1991) Amphibians and reptiles of the West Indies: descriptions, distributions, and natural history. University of Florida Press, Gainesville, 720 pp.
  • Schwartz, A., & Rossman, D.A. (1976) A review of the Hispaniolan colubrid snake genus Ialtris. Studies on the Fauna of Curacao and Other Caribbean Islands, 50, 76-102.
  • Schwartz, A. & Thomas, R. (1965) The Genus Darlingtonia (Serpentes) in Hispaniola including a new subspecies from the Dominican Republic. Breviora, 229, 1-10.
  • Stamatakis, A. (2006) RAxML-VI-HPC: Maximum Likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
  • Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML Web-Servers. Systematic Biology, 57, 758-771.
  • Thomas, R., Henderson, R.W., Powell, R. & Rodriguez, P.G. (2007) Alsophis anomalus (Hispaniolan Brown Racer). Herpetological Review, 38, 338-339.
  • Thomas, R.A. (1997) Galapagos terrestrial snakes: biogeography and systematics. Herpetological Natural History 5, 19-40.
  • Thorne, J.L. & Kishino, H. (2002) Divergence time and evolutionary rate estimation with multilocus data. Systematic Biology, 51, 689-702.
  • Uetz, P., Goll, J. & Hallerman, J. (2008) The TIGR Reptile Database. Available: http://www.reptile-database.org/ (Accessed: August 4, 2008).
  • Vidal, N. (2002) Colubroid systematics: evidence for an early appearance of the venom apparatus followed by extensive evolutionary tinkering. Journal of Toxicology - Toxin Reviews, 21, 21-41.
  • Vidal, N. & Hedges, S.B. (2002a) Higher-level relationships of snakes inferred from four nuclear and mitochondrial genes. Comptes Rendus Biologies, 325, 977-985.
  • Vidal, N. & Hedges, S.B. (2002b) Higher-level relationships of caenophidian snakes inferred from four nuclear and mitochondrial genes. Comptes Rendus Biologies, 325, 987-995.
  • Vidal, N. & Hedges, S.B. (2005) The phylogeny of squamate reptiles (lizards, snakes, and amphisbaenians) inferred from nine nuclear protein-coding genes. Comptes Rendus Biologies, 328, 1000-1008.
  • Vidal, N., Kindl, S.G., Wong, A. & Hedges, S.B. (2000) Phylogenetic relationships of xenodontine snakes inferred from 12S and 16S ribosomal RNA sequences, Molecular Phylogenetics and Evolution, 14, 389-402.
  • Vidal, N., Delmas, A.-S., David, P., Cruaud, C., Couloux, A. & Hedges, S.B. (2007) The phylogeny and classification of caenophidian snakes inferred from seven nuclear protein-coding genes. Comptes Rendus Biologies, 330, 182-187.
  • Vidal, N., Rage, J.-C., Couloux, A. & Hedges, S.B. (2009) Snakes (Serpentes). In: Hedges, S.B. & Kumar, S. (Eds.), The Timetree of Life. Oxford University Press, New York, pp. 390-397.
  • Wiens, J.J., Brandley, M.C. & Reeder, T.W. (2006) Why does a trait evolve multiple times within a clade? Repeated evolution of snakelike body form in squamate reptiles. Evolution, 60, 123-141.
  • Winnepenninckx, B., Backeljau, T. & Dewachter, R. (1993) Extraction of high molecular weight DNA from molluscs. Trends in Genetics, 9, 407.
  • Yang, Z. & Yoder, A.D. (2003) Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse lemur species. Systematic Biology, 52, 705-716.
  • Yang, Z. (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. CABIOS, 13, 555-556.
  • Zaher, H. (1999) Hemipenial morphology of the South American xenodontine snakes, with a proposal for a monophyletic Xenodontinae and a reappraisal of colubroid hemipenes. Bulletin of the American Museum of Natural History, 240, 1-168.
  • Zaher, H., Grazziotin, F.G., Cadle, J.E., Murphy, R.W., Moura-Leite, J.C. & Bonatto, S.L. (2009) Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South America xenodontines: a revised classification and descriptions of new taxa. Papeis Avulsos de Zoologia, 49,115-153.