Biodiversity Literature Repository
Published December 31, 2008 | Version v1
Journal article Restricted

Molecular evidence for a polyphyletic genus Japonia (Architaenioglossa: Cyclophoridae) and with the description of a new genus and two new species

Creators

Description

Lee, Yen-Chen, Lue, Kuang-Yang, Wu, Wen-Lung (2008): Molecular evidence for a polyphyletic genus Japonia (Architaenioglossa: Cyclophoridae) and with the description of a new genus and two new species. Zootaxa 1792: 22-38, DOI: 10.5281/zenodo.182539

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Has part
Taxonomic treatment: 10.5281/zenodo.5612446 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/1A5C87CAFFD5C46A6EA4F8A8FD38FEF4 (URL)
Taxonomic treatment: 10.5281/zenodo.5612448 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/1A5C87CAFFD1C4696EA4F938FE90FF54 (URL)
Taxonomic treatment: 10.5281/zenodo.5612450 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/1A5C87CAFFD2C4696EA4FEF5FDCBFA82 (URL)
Dataset: http://table.plazi.org/id/C68A6654FFDEC4656EA4FE45FA95FE11 (URL)
Dataset: http://table.plazi.org/id/C68A6654FFD8C4636EACFF5DFE3EFF39 (URL)
Figure: 10.5281/zenodo.182540 (DOI)
Figure: 10.5281/zenodo.182541 (DOI)
Figure: 10.5281/zenodo.182542 (DOI)
Figure: 10.5281/zenodo.182543 (DOI)
Dataset: http://table.plazi.org/id/C68A6654FFD5C46E6EA4FD5EFA93FD3A (URL)
Figure: 10.5281/zenodo.182544 (DOI)
Figure: 10.5281/zenodo.182545 (DOI)
Figure: 10.5281/zenodo.182546 (DOI)
Figure: 10.5281/zenodo.182547 (DOI)
Is source of
Dataset: https://www.gbif.org/dataset/34920f8b-0885-4020-953d-a6e2cc21f142 (URL)

References

  • Azuma, M. (1982) Colored illustrations of the land snail of Japan (Enlarged revised edition). Hoikusha Publishing Co. Ltd. Oaska, XVI, 343 pp.
  • Barrett, R.D.H. & Hebert, P.D.N. (2005) Identifying spiders through DNA barcoding. Canadian Journal of Zoology, 83, 481-489.
  • Chiba, S. (1999) Accelerated evolution of land snails Mandarina in the oceanic Bonin Islands: evidence from mitochondrial DNA sequences. Evolution, 53, 460-471.
  • Farris, J.S., Kallersj, M., Kluge, A.G. & Bult, C. (1995) Constructing a significance test for incongruence. Systematic Biology, 44, 570-572.
  • Gould, A.A. (1859) Descriptions of shells collected in the North Pacific Exploring Expedition under Captains Ringgold and Rodgers. Proceedings of Boston Society of Natural History, 6, 422-426; 7, 40-45, 138-142.
  • Gray, J.E. (1839) Molluscous animals and their shells. In: Beechey, E.W. (Ed.), The Zoology of Captain Beechey's Voyage-in His Majesty's Ship Blossom. pp. 103-155.
  • Gray, J.E. (1847) A list of the genera of recent Mollusca, their synonyma and types. Proceeding of the Zoological Society of London, 15, 129-219
  • Guindon, S. & Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704.
  • Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/ 98/NT. Nucleic Acid Research Symposium Series, 41, 95-98.
  • Healy, J.M. (1996) Molluscan sperm ultrastructure: correlation with taxonomic units within the Gastropoda, Cephalopoda and Bivalvia. In: Taylor, J.D. (Ed.), Origin and Evolutionary Radiation of the Mollusca. Oxford University Press, New York, pp. 99-113.
  • Hebert, P.D.N., Penton, E.H., Burns, J.M., Janzen, D.H., & Hallwachs, W. (2004a) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Science, 101, 14812-14817.
  • Hebert, P.D.N., Stoeckle, M.Y., Zemiak, T.S., Francis, C.M. (2004b) Identification of birds through DNA barcodes. PLoS Biology, 2, 1657-1663.
  • Higo, S.I. & Goto, Y.H. (1993) A systematic list of molluscan shells from Japanese Is. and adjacent area. Elle Scientific Publications, Osaka, Japan, 693 pp.
  • Hogg, I.D., & Hebert, P.D.N. (2004) Biological identification of springtails (Collembola: Hexapoda) from the Canadian Arctic, using mitochondrial DNA barcodes. Canadian Journal of Zoology, 82, 749-754.
  • Jiang, L., Wu, W.L. & Lin, Y.S. (1997) Efficient methods for isolating mitochondrial DNA from fresh or fixed molluscan specimens. Zoological Studies, 36, 74-78.
  • Kantor, Y.I., (1996) Phylogeny and relationships of Neogastropoda. In: Taylor, J.D. (Ed.), Origin and evolutionary radiation of the Mollusca. Oxford University Press, New York, pp. 221-230.
  • Kay, E.A., Wells, F.E. & Ponder, W.F. (1998) Class Gastropoda. In: Beesley, P.L., Ross, G.J.B. & Wells, A. (Eds), Mollusca: The Southern Synthesis. Fauna of Australia, vol. 5, part B. CSIRO Publishing, Melbourne, pp. 565-604.
  • Kishino, H. & Hasegawa, M. (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. Journal of Molecular Evolution, 29, 170-179.
  • Kuroda, T. (1941) A catalogue of Molluscan shells from Taiwan (Formosa), with descriptions of new species. Memoirs of the faculty of science and agriculture Taihoku Imperial University, 22, 66-216.
  • Lee, Y.C. & Wu, W.L. (2001) The cyclophorids fauna of Taiwan. Bulletin of Malacoloy Republic of China, 25, 45-78.
  • Lee, Y.C., Lue, K.Y. & Wu, W.L. (2008) A molecular phylogenetics investigation of Cyathopoma (Prosobranchia: Cyclophoridae) in East Asia. Zoological Studies, in press.
  • Linn, C. (1758) Systema naturae per regna tria naturae. 10th ed. Stockholm, 824 pp.
  • Lydeard, C., Holznagel, W.E., Ueshima, R. & Kurabayashi, A. (2002) Systematic implications of extreme loss or reduction of mitochondrial LSU rRNA helical-loop structures in gastropods. Malacologia, 44, 349-352.
  • Lydeard, C., Holznagel, W.E., Glaubrecht, M. & Ponder, W.F. (2002) Molecular phylogeny of a circum-global, diverse gastropod superfamily (Cerithioidea: Mollusca: Caenogastropoda): pushing the deepest phylogenetic limits of mitochondrial LSU rDNA sequences. Molecular Phylogenetics and Evolution, 22, 399-406.
  • McArthur, A.G. & Koop, B.F. (1999) Partial 28S rDNA sequences and the antiquity of hydrothermal vent endemic gastropods. Molecular Phylogenetics and Evolution, 13, 255-274.
  • Millard, V. (1996) Classification of Mollusca-A classification of world wide Mollusca. Victor Millard, South Africa. 544 pp.
  • Minato, H. (1985) Two new Japonia (Prosobranchia: Cyclophoridae) from Japan. Venus, 44, 81-86.
  • Paquin, P. & Hedin, M. (2004) The power and perils of molecular taxonomy: a case study of eyeless and endangered Circurina (Araneae: Dictynidae) from Texas caves. Molecular Ecology, 13, 3239-3255.
  • Pilsbry, H.A. (1900) Notices of some new Japanese mollusks. The Nautilus, 14, 11-12.
  • Pilsbry, H.A. & Hirase, Y. (1904) Descriptions of new land snails of the Japanese Empire. Academy of Natural Sciences of Philadelphia, 56, 616-632.
  • Pilsbry, H.A. & Hirase, Y. (1905) Catalogue of the land and freshwater Mollusca of Taiwan (Formosa), with description of new species. Academy of Natural Sciences of Philadelphia, 57, 720-752.
  • Pinceel, J., Jordaens, K., Van Houtte, N., De Winter, A.J. & Backeljau, T. (2004) Molecular and morphological data reveal cryptic taxonomic diversity in the terrestrial slug complex Arion subfuscus/fuscus (Mollusca, Pulmonata, Arionidae) in continental north-west Europe. Biological Journal of the Linnean Society, 83, 23-38.
  • Ponder, W.F. & Lindberg, D.R. (1997) Towards a phylogeny of gastropod molluscs: an analysis using morphological characters. Zoological Journal of the Linnean Society, 119, 88-265.
  • Posada D. & Crandall K.A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
  • Remigio, E.A. & Hebert, P.D.N. (2003) Testing the utility of partial COI sequences for phylogenetic estimates of gastropod relationships. Molecular Phylogenetics and Evolution, 29, 641-647.
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Baysian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
  • Rosenberg, G., Tillier, S., Tillier, A., Kuncio, G.S., Hanlon, R.T., Masselot, M. & Williams, C.J. (1997) Ribosomal RNA phylogeny of selected major clades in the mollusca. Journal of Molluscan Studies, 63, 301-309.
  • Smith, M.A., Woodley, N.E., Janzen, D.H., Hallwachs, W. & Hebert, P.D.N. (2006) DNA barcodes reveal cryptic hostspecificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae). Proceedings of the National Academy of Science, 103, 3657-3662.
  • Swofford, D.L. (1998) PA U P * 4 .0: Phylogenetic Analysis Using Parsimony (*and Other Methods). Sunderland, Massachusetts (software).
  • Tajima, F. (1989) Statistical methods to test for nucleotide mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
  • Thollesson, M. (1999) Phylogenetic analysis of Euthyneura (Gastropoda) by means of the 16S rRNA gene: use of a 'fast' gene for 'higher-level' phylogenies. Proceedings of the Royal Society of London Series B, 266, 75-83.
  • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876-4882.
  • Tillier, S., Masselot, M., Philippe, H. & Tillier, A. (1992) Phylogenie moleculaire des Gastropoda (Mollusca) fondee sur le sequencage partiel de l'ARN ribosome 28S. Comptes Rendus de l'Academie Des Sciences Paris, 314, 79-85.
  • Vaught, K.C. (1989) A classification of the living Mollusca. American Malacolgists, Inc. Melbourne, Florida. 189 pp.
  • Williams, S.T., Reid, D.G. & Littlewood, D.T. (2003) A molecular phylogeny of the Littorininae (Gastropoda: Littorinidae): unequal evolutionary rates, morphological parallelism, and biogeography of the Southern Ocean. Molecular Phylogenetics and Evolution, 28, 60-86.