Published May 5, 2016
| Version v1
Software
Open
Burkholderia cenocepacia data RNA-Seq analysis scripts for Sass et al.
Creators
- 1. Laboratory of Pharmaceutical Microbiology, Ghent University, Ghent, Belgium
- 2. Core Unit Systems Medicine, University of Würzburg, Germany
- 3. Laboratory of Pharmaceutical Biotechnology, Ghent University, Ghent, Belgium
- 4. Institute for Molecular Infection Biology, University of Würzburg, Germany
Description
These shell scripts are part of the publication "Genome-widetranscription start site profiling in biofilm-grown Burkholderia cenocepacia J2315" by Andrea Sass et al. (DOI:10.1186/s12864-015-1993-3).
Please generate a folder "FASTQ" and add the raw sequences in FASTQ format (deposited at ArrayExpress under the accession number E-MTAB-3381) in that folder. The files should be called the following:
- RNA_BF1_minus_TEX.fq.bz2
- RNA_BF1_plus_TEX.fq.bz2
- RNA_BF2_minus_TEX.fq.bz2
- RNA_BF2_plus_TEX.fq.bz2
To perform the analysis run
./run_analysis.sh
Please make sure that the software is installed and the variable are set accordingly in run_analysis.sh. To install the required software you can use
./install_software.sh
Files
Files
(3.5 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:34e774ce302bf665f1ce4e854a2f1be0
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3.5 kB | Download |
Additional details
Related works
- Is supplement to
- 10.1186/s12864-015-1993-3 (DOI)
- PMID:25646441 (PMID)