Published April 22, 2025 | Version Version 2
Dataset Open

Estimating recent and historical effective population size of marine and freshwater sticklebacks

Creators

  • 1. ROR icon University of Helsinki
  • 2. ROR icon University of Hong Kong

Contributors

Contact person:

Project leader:

Supervisor:

  • 1. ROR icon University of Helsinki
  • 2. ROR icon University of Hong Kong

Description

Genetic data, code, and scripts used in the manuscript: 

X. Feng, A. Löytynoja, J. Merilä;  Estimating recent and historical effective population size of marine and freshwater sticklebacks

The zipped file sticklebackne_data&script.zip contains the input data and output files for each of the analyses, organized into separate folders.

Filtered autosomal data in VCF format are located in the filtered_positive_mask_vcf folder. Details of the filtering criteria are provided in the manuscript.

Scripts and code used can be found in 

  1. Rscript.txt 
  2. unix_scripts.txt

 

Files

sticklebackne_data&script.zip

Files (26.3 GB)

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md5:b965d4dcbb0551af7f75cf02c0de3166
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Additional details

Funding

Research Council of Finland
Centre of Excellence in Evolutionary Genetics and Physiology 129662
Research Council of Finland
Evolutionary genetics of adaptation in the wild 134728
Research Council of Finland
Evolutionary Genetics of Adaptation in the Wild 218343
Research Council of Finland
Infidelity and partner swapping: template switch mutations through time and space 322681