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nextgenusfs/amptk: amptk v1.2.5

Jon Love; Jon Palmer; Jason Stajich; Franzwagner Ternus; Vladimir Mikryukov

  • bug fix where edlib version was not properly parsed due to changes upstream, fix is backwards compatible and hopefully future version compatible as well. This was error in #40 and several other "offline" emails.
  • update to amptk stats to generate interactive html output for NMDS output, allowing users to identify which samples correspond to which point on the graph. This requires r-plotly, r-htmltools, and r-dt -- however should be all installed through bioconda
  • bug fixes for amtpk SRA-submit
  • improve error/logging in amptk taxonomy
  • fix R scripts to be compatible with R>3.4.1 -- somehow different way of parsing the command line arguments. Also removed the "auto-install" function in the R scripts -- this was meant to be a convenience but didn't always work.

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