Biodiversity Literature Repository

Submit to community
Liberated Data
Published September 30, 2015 | Version v1
Journal article Open

The foraminifera.eu database: concept and status

Authors/Creators

Description

Hesemann, M (2015): The foraminifera.eu database: concept and status. Palaeontologia Electronica 28 (1): 1-14, DOI: 10.26879/154e, URL: http://dx.doi.org/10.26879/154e

Files

source.pdf

Files (3.9 MB)

Name Size Download all
md5:0ce9e66c0f0c791ea725fd0838f736dc
3.9 MB Preview Download

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:FFE9E66C0F0C791EA725FD08FFF7FFDC

Has part
Figure: 10.5281/zenodo.13305536 (DOI)
Figure: 10.5281/zenodo.13305538 (DOI)
Figure: 10.5281/zenodo.13305540 (DOI)
Figure: 10.5281/zenodo.13305544 (DOI)
Figure: 10.5281/zenodo.13305546 (DOI)
Figure: 10.5281/zenodo.13305549 (DOI)
Figure: 10.5281/zenodo.13305551 (DOI)
Figure: 10.5281/zenodo.13305553 (DOI)

References

  • Albani, A., Hayward, B.W., and Grenfell, H.R. 2001. Taxomorph: Foraminifera from the South-west Pacific. An inter-active catalogue, CD-ROM. University of New South Wales and Australian Biological Resources Study.
  • Apache Friends 2015. XAMPP. Accessed at https:// www.apachefriends.org/index.html on 2015-05-25.
  • Arntzen, T.C., Bakken, S., Caraveo, S., and Gutmans, A. 2015. PHP.net. Accessed at php.net on 2015-05-25.
  • Bonney, R., Cooper, C.B., Dickinson, J., Kelling, S., Phillips, T., Rosenberg, K.V., and Shirk, J. 2009. Citizen Science: A Developing Tool for Expanding Science Knowledge and Scientific Literacy. BioScience, 59:977-984.
  • Brady, H.B. 1884. Report on the foraminifera dredged by HMS Challenger, during the years 1873-1876. Report on the Scientific Results of the Voyage of HMS Challenger, Zoology 9:1-814.
  • Caruso, A. and Cosentino, C. 2014. The first colonization of the Genus Amphistegina and other exotic benthic foraminifera of the Pelagian Islands and south-eastern Sicily (central Mediterranean Sea). Marine Micropaleontology, 111:38-52.
  • Chronos 2015. Chronos MesozoicDB. Accessed at portal.chronos.org/gridsphere/gridsphere;jsessionid=D5D17C0C530157DD9CDC71CAE3CFB5B1 ?cid=res_taxondb on 2015-05-22.
  • Cohen, K.M., Finney, S., Gibbard, P.L., and Fan, J.-X. 2015. The ICS International Chronostratigraphic Chart 2015/01. IUGS.
  • Culver, S.J. and Buzas, M.A. 1982. Recent benthic foraminiferal provinces between Newfoundland and Yucatan. Geological Society of America Bulletin, 93:269-277.
  • Culver, S.J. and Buzas, M.A. 1985. Distribution of Recent Benthic Foraminifera off the North American Pacific Coast from Oregon to Alaska. Smithsonian Contributions to the Marine Sciences, 26:1-234.
  • Cushman, J.A. 1928. Foraminifera, their classification and economic use. Special Publ. No. 1, Cushman Lab. Foram. Res.1-401.
  • Davis, M. and Phillips, J. 2006. Learning PHP and MySQL. O'Reilly, Sebastopol, USA.
  • De Clerck, O., Guiry, M.D., Leliaert, F., Samyn, Y., and Verbruggen, H. 2013. Algal taxonomy: a road to nowhere? Journal of Phycology, 49:215-225.Inst de Vargas, C., Norris, R., Zaninetti, L., Gibb, S.W., and Pawlowski, J. 1999. Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces. Proc. Natl. Acad. Sci. USA, 96:2864-2868.
  • Debenay, J.P. 2012. A Guide to 1,000 Foraminifera from Southwestern Pacific: New Caledonia. Institut de recherche pour le developpement, Marseille.
  • d'Orbigny, A. 1839. Foraminiferes, 224 pp.. In De la Sagra, R.M. (ed.), Histoire physique, politique et naturelle de L'ile de Cuba. Bertrand, A., Paris.
  • Dolven, J.K. and Skjerpen, H. 2011. Paleoinformatics: Past, Present and Future Perspectives, p. 45-52. In Elewa, A.M.T. (ed.), Computational Paleontology. Springer, Heidelberg.
  • Ellis, B.F. and Messina, A. 1940-2014. Catalogue of foraminifera. Micropaleontology Press, American Museum of Natural History, New York.
  • Encyclopedia of Life 2015. EOL. www.eol.org on 2015- 05-25.
  • Flanders Marine Institute VLIZ 2015. Foraminifera Photogallery MARBEF. www.marbef.org/modules.php?name=Photogallery&album=418 on 2015- 05-25.
  • Frenzel, P. 2000. Die benthischen Foraminiferen der Ruegener Schreibkreide (Unter-Maastrichtium, NE- Deutschland), 3. Neue Palaeontologische Abhandlungen, Dresden.
  • Frontalini, F. and Coccioni, R. 2007. Benthic foraminifera for heavy metal pollution monitoring: A case study from the central Adriatic Sea coast of Italy. Estuarine, Coastal and Shelf Science, 76:404-417.
  • Gebhardt, H. 2010. Foraminiferal holotypes, lectotypes, and syntypes stored in the paleontological collection of the Geological Survey of Austria. Jahrbuch der Geologischen Bundesanstalt, 150:245-262.
  • Gradstein, F.M., Ogg, J.G., Schmitz, M.D., and Ogg, G.M. 2012. The Geologic Time Scale 2012, 2-volume set. Elsevier, Oxford, U.K.
  • Hayward, B.W., Cedhagen, T., Kaminski, M., and Gross, O. 2015. World Foraminifera Database. www.marinespecies.org/foraminifera on 25 May 2015.
  • Hesemann, M. 2010. Concept for a foraminiferal database. In Bonn, O.C.i. (ed.), Forams 2010, International Symposium on Foraminifera. Rheinische Friedrich-Wilhelms-Universitaet, Bonn.
  • Hesemann, M., Ottway, B., and Legoinha, P. 2014. The Foraminifera.eu Project - A paleoinformatics bridge between science and community. Comunicacoes Geologicas, 101, Especial I:447-450.
  • Jadhav, A.S. and Sonar, R.M. 2009. Evaluating and selecting software packages: A review. Information and Software Technology, 51:555-563.
  • Jones, R.W. 1994. The Challenger Foraminifera. Oxford University Press, Oxford, U.K.
  • Kaminski, M.A. and Gradstein, F.M. 2005. Atlas of Paleogene cosmopolitan deep-water agglutinated foraminifera. Grzybowski Foundation Special Publication, 1- 547.
  • Kennett, J.P. and Srinivasan, M.S. 1983. Neogene planktonic foraminifera. A phylogenetic atlas. Hutchinson Ross Publishing Company, Stroudsburg.
  • Langer, M.R., Weinmann, A.E., Lotters, S., and Rodder, D. 2012. "Strangers" in Paradise: Modeling the biogeographic range expansion of the foraminifera Amphistegina in the Mediterranean Sea. Journal of Foraminiferal Research, 42:234-244.
  • Linnaeus, C. 1758. Systema naturae per regna tria naturae, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, 1, 10th edition. L. Salvii, Holmiae, Stockholm.
  • Lipps, J.H. and Finger, K.L. 2010. How many foraminifera are there ?, pp. 132. In Langer, M., Weinmann, A., Sontgerath, B., Goddertz, P., and Heumann, G. (eds.), Forams 2010, International Symposium on Foraminifera. Organizing Committee in Bonn, Bonn.
  • Loeblich, A.R. and Tappan, H. 1988. Foraminiferal genera and their classification. Van Nostrand Reinhold, New York.
  • Loser, H. 2004. PaleoTax - a database program for palaeontological data. Computer and Geosciences, 30:513-521.
  • Marine Biological Laboratory 2015. Micro*Scope. pinkava.asu.edu/starcentral/microscope/ on 2015- 05-25.
  • Marsson, T. 1878. Die Foraminiferen der weissen Schreibkreide der Insel Ruegen. Mitteilungen des naturwissenschaftlichen Vereins Neu-Vorpommern und Ruegen in Greifswald. 10:115-196, Berlin.
  • Mikhalevich, V.I. 2004. On the heterogeneity of the former Textulariina (Foraminifera), p. 317-349. In Bubik, M., and Kaminski, M. (eds.), Proceedings of the Sixth International Workshop on Agglutinated Foraminifera. Grzybowski Foundation Special Publication, Krakow.
  • Murray, J.W. 2006. Ecology and applications of benthic foraminifera. Cambridge University Press, Cambridge.
  • Neagu, T. 2000. Lower Cretaceous calcareous agglutinated Foraminifera from Southern Dobrogea, Romania. Part ll. Early Cretaceous Cuneolinidae, p. 363- 386. In Hart, M.B., Kaminski, M.A., and Smart, C.W. (eds.), Proceedings of the Fifth International Workshop on Agglutinated Foraminifera. Grzybowski Foundation Special Publication, Krakow.
  • Nixon, R. 2012. Learning PHP, MySQL, JavaScript, and CSS: A Step-by-Step Guide to Creating Dynamic Websites. O'Reilly Media, Sebastopol, USA.
  • Olsson, R.K., Hemleben, C., Berggren, W., and Huber, B.T. 1998. Atlas of Paleocene planktonic foraminifera. Smithsonian Contributions to Paleobiology 1- 252.
  • Papp, A. and Schmidt, M.E. 1985. Die fossilen Foraminiferen des Tertiaren Beckens von Wien. Revision der Monographie von Alcide d'Orbigny (1846). Abhandlungen der Geologischen Bundesanstalt, 37:1-311.
  • Pawlowski, J., Holzmann, M., Berney, C., Fahrni, J., Gooday, A.J., Cedhagen, T., Habura, A., and Bowser, S.S. 2003. The evolution of early Foraminifera. Proceedings of the National Academy of Sciences, 100:11494-11498.
  • Pawlowski, J., Holzmann, M., and Tyszka, J. 2013. New supraordinal classification of Foraminifera: Molecules meet morphology. Marine Micropaleontology, 100:1- 10.
  • Pearson, P.N., Olsson, R.K., Huber, B.T., Hemleben, C., and Berggren, W.A. 2006. Atlas of Eocene Planktonic Foraminifera. Cushman Foundation Special Publication, 41.
  • Petrizzo, M.R., Premoli Silva, I., and Verga, D. 2011. Practical Manual of Cretaceous Planktonic Foraminifera, New Revision. International School on Planktonic Foraminifera, 3rd Course 2004.
  • Polovodova, I., Nikulina, A., Schoenfeld, J., and Dullo, W.-C. 2009. Recent benthic foraminifera in the Flensburg Fjord (Western Baltic Sea). Journal of Micropalaeontology, 28:131-142.
  • Roennfeld, W. 2008. Foraminiferen, ein Katalog typischer Formen, 3rd edition. Self published, Tuebingen.
  • Setoyama, E., Kaminski, M.A., and Tyszka, J. 2011. Late Cretaceous Agglutinated Foraminifera and Implications for the Biostratigraphy and Palaeobiogeography of the southwestern Barents Sea, p. 251-309. In Kaminski, M.A., and Filipescu, S. (eds.), Proceedings of the Eighth International Workshop on Agglutinated Foraminifera. Grzybowski Foundation Special Publication 16, Krakow.
  • Simmons, D. 2008. Epigenetic influence and disease. Nature Education, 1(1):6.
  • Skoglund, K. 2008. PHP with MYSQL Essential Training. Lynda.com.
  • Szarek, R.K., Klosowska, B., Prokoph, A., Kuhnt, W., and Wagner, T. 2000. Upper Albian agglutinated foraminifera of Northeast Germany, p. 445-463. In Hart, M.B., Kaminski, M.A., and Smart, C.W. (eds.), Proceedings of the Fifth International Workshop on Agglutinated Foraminifera. Grzybowski Foundation Special Publication, Krakow.
  • The Global Biodiversity Information Facility 2015. GBIF. www.gbif.org/ on 2015-05-25.
  • Zalecka, K., Wrzolek, T., and Granier, B. 2015. Simple and practical techniques to manage small databases, illustrated by a case study: bibliographic data from the "Fossil Cnidaria & Porifera" newsletter (1972- 2010). Carnets de Geologie / Notebooks on Geology, 15(2):13-19.
  • Zicha, O., Hrb, J., Manas, M., and Novak, J. 2015. BioLib.cz. www.biolib.cz/en/main/ on 2015-05-25.