Project deliverable Open Access

Assembly queries

Nadzirin, Nurul

This deliverable describes the functionality of the query system provided by the PDBe (Mir, et al., 2018) to search for different criteria important for macromolecular assemblies available in the PDB and EMDB data archives, as well as value added data on complexes at PDBe. 

It also reports the development of a search system for predicted model complexes based on the results of previous CAPRI experiments (Janin, et al., 2003). Taken together, the aim is to offer a comprehensive search system of macromolecular complexes comprising of both experimentally established and predicted structures. Some of these complexes fall into the realm of integrative/hybrid methods, as they integrate experimental data from multiple methods. In this report, these query systems will be referred to as the PDBe Advanced Search system, and the CAPRI Search system.

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