Published June 14, 2018 | Version v1.0.4
Software Open

chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data

Creators

  • 1. Department of Animal Ecology and Tropical Biology (Zoology III), University of Würzburg, Germany
  • 2. Center for Computational and Theoretical Biology, University of Würzburg
  • 3. Centre for Experimental Molecular Medicine, University Clinics Würzburg, Germany
  • 4. Department of Bioinformatics, University of Würzburg, Germany
  • 5. Research Group for Ancient Genomics and Evolution, Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany
  • 6. Department of Civil and Environmental Engineering, Massachusetts Institute of Technology
  • 7. Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Applied Ecology and Bioresources, Gießen, Germany

Description

The chloroExtractor is a perl based program which provides a pipeline for DNA extraction of chloroplast DNA from whole genome plant data.

Notes

The authors MJA and SP contributed equally to this work. MJA was supported by a grant of the German Excellence Initiative to the Graduate School of Life Sciences, University of Würzburg.

Files

Files (40.1 MB)

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Additional details

Related works

Is supplement to
https://github.com/chloroExtractorTeam/chloroExtractor/tree/v0.2_interactive (URL)