Published May 6, 2017 | Version v3
Dataset Open

Raw data for figures used in manuscript - Highly parallel single-molecule identification of proteins in zeptomole-scale mixtures

  • 1. University of Texas at Austin

Description

Raw Image files used for generating the figures (Fig 2, Fig3, Fig4, Fig5 and Fig6, Supplementary figures, files needed for background subtraction and image processing tutorial (docker image)) in the manuscript - Highly parallel single-molecule identification of proteins in zeptomole-scale mixtures

Use command tar xfz[v] *.tar.gz to retain the file structure.  

Docker image in image processing tutorial works on Linux platforms only.

File structure after un-compressing each *.tar.gz is as follows - 

1. acetylated_background_signalsFiles.tar.gz

    - Folders for the different experiments with the name expt[1..30]

             - *SIGNALS.pkl - Pickle file (python encoded) containing the information of the histogram of the peptide step-drops

     - acetylated_backgroundFiles_list.csv (file formatted for performing iterative_background.py)

     - README.txt (information on the contents and the use of the files in the directory)

2. fig2.tar.gz

     - fig2A/ (contains raw image folders, processed_results and README.txt)

     - fig2B/ (contains raw image folders, processed_results and README.txt)

2. fig3and4.tar.gz

     - acPeptide_label-2-5/ (contains raw image folders, processed_results)

     - bocPeptide_label-2-5/ (contains raw image folders, processed_results)

     - README.txt

3. fig5.tar.gz

     - fig5A_panel1/ (contains raw image folders, processed_results and README.txt)

     - fig5A_panel2/ (contains raw image folders, processed_results and README.txt)

     - fig5B_A2/ (contains raw image folders, processed_results and README.txt)

     - fig5B_A3/ (contains raw image folders, processed_results and README.txt)

     - fig5B_B1/ (contains raw image folders, processed_results and README.txt)

     - fig5B_B2/ (contains raw image folders, processed_results and README.txt)

     - fig5C/ (contains raw image folders, processed_results and README.txt)

     - fig5D/ (contains raw image folders, processed_results and README.txt)

5. fig6.tar.gz

     - fig6B_top/ (contains raw image folders, processed_results and README.txt)

     - fig6B_bottom/ (contains raw image folders, processed_results and README.txt)

6. fig_supplementary08.tar.gz

     - (contains raw image folders, processed_results and README.txt)

7. fig_supplementart12.tar.gz

     - supplementary_fig14A/ (contains raw image folders, processed_results and README.txt)

     - supplementary_fig14B/ (contains raw image folders, processed_results and README.txt)

8. imageProcessingTutorial.tar.gz

     - walkthrough_docker_image.tar.xz (contains the docker image with necessary code pre-installed. Includes small example dataset; Works only in linux docker and not macOS)

     - README.txt (information on the image processing tutorial). 

Notes

Contact Jagannath Swaminathan ( jagannath[at]utexas[dot]com ) for information about the uploaded files

Files

Files (75.2 GB)

Name Size Download all
md5:e23e4bceb7f3876b159f43150e73e307
216.8 kB Download
md5:a265e55376bfd780f9b1327a7ca2db18
15.9 GB Download
md5:74b86ab796f958e76faf5911e4512d3a
1.2 GB Download
md5:71cf146071b00108f939af3edc043c68
14.1 GB Download
md5:406988e5c5be12889064570cb378d99b
1.4 GB Download
md5:8d076d2e6a41ca986836d5435a3d5093
15.9 GB Download
md5:27bb0cdf7d6b139f483648121ebdef92
25.9 GB Download
md5:54d6612b008cf2a16cd31a35f6c03202
649.5 MB Download