cleberecht/singa: singa-all release 0.3.3

Updates and features

Mathematics

• adds implementation of the RI Subgraph Finder algorithm
• moved graph parsing from singa-simulation to singa-mathematics

Feature

• reimplemented feature retrieval process
• identifiers from databases are now features and can be mapped via UniChem

Structure

• added fragment-based superimposition
• added detection of molecule subgraphs
• added access to PDB REST API
• fixed issues with PDB file parsing
• improved parsing of PLIP files

Installation

You can add all SiNGA to your project by adding the following dependency to your pom.xml.

<dependency>
    <groupId>de.bioforscher.singa</groupId>
    <artifactId>'artifact'</artifactId>
    <version>0.3.3</version>
</dependency>