Published April 20, 2018
| Version 1.1.1
Software
Open
RNA-seq Quantification of Alternative Polyadenylation (QAPA)
Description
RNA-seq Quantification of Alternative Polyadenylation (QAPA)
Analysis of alternative polyadenylation (APA) from RNA-seq data (human and mouse). QAPA consists of two main components:
- Extraction and annotation of 3' UTR sequences from gene models
- Calculation of relative usage of alternative 3' UTR isoforms based on transcript-level abundance
----
Pre-compiled 3' UTR libraries for human (hg19) and mouse (mm10) are also provided.
Files
Files
(4.7 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:5e39f6977269f87d73fab0a96867c6be
|
2.9 MB | Download |
|
md5:0eb598d281cca3fa3d3671389fc14c59
|
936.4 kB | Download |
|
md5:125f2192a41c890d702b2117d4f6682d
|
830.5 kB | Download |
Additional details
Related works
- Is supplement to
- https://github.com/morrislab/qapa (URL)