Dataset Open Access

Modeling of the yeast Nuclear Pore Complex

Kim, Seung Joong; Fernandez-Martinez, Javier; Nudelman, Ilona; Shi, Yi; Zhang, Wenzhu; Raveh, Barak; Herricks, Thurston; Slaughter, Brian D.; Hogan, Joanna; Upla, Paula; Chemmama, Ilan E.; Pellarin, Riccardo; Echeverria, Ignacia; Shivaraju, Manjunatha; Chaudhury, Azraa S.; Wang, Junjie; Williams, Rosemary; Unruh, Jay R.; Greenberg, Charles H.; Jacobs, Erica Y.; Yu, Zhiheng; de la Cruz, M. Jason; Mironska, Roxana; Stokes, David L.; Aitchison, John D.; Jarrold, Martin F.; Gerton, Jennifer L.; Ludtke, Steven J.; Akey, Christopher W.; Chait, Brian T.; Sali, Andrej; Rout, Michael P.

Data manager(s)
Webb, Benjamin

These scripts demonstrate the use of IMP in the modeling of the yeast NPC complex using diverse types of data as described in Seung Joong Kim, et al.'s 2018 NPC article published in Nature.

For more information about how to reproduce this modeling, see the Sali lab website or the README file.

Files (3.0 GB)
Name Size
data_MODELLER.zip
md5:615dc41ed30e3dbee06b62cca6a2ef74
9.8 MB Download
data_nic96.zip
md5:f095f6ea835e7d2ba03dec0b58fffc03
4.8 MB Download
data_nup82.zip
md5:2a5cd4f46039ba2fe2c2748d0d2e17e2
3.1 MB Download
data_nup84_2016.zip
md5:139bbe2b0c78b264ec562355f70f0108
16.6 MB Download
em_gmm_model.zip
md5:588d1459e5928c5ddbbbbdfb8c864a86
180.7 MB Download
generating_em_gmm.zip
md5:fbe9324fca8cc3c9d1f1056d5b473e48
62.8 MB Download
MRC-1spoke.zip
md5:bea734334d5abaca6cd137232f72e979
25.7 MB Download
MRC-3spoke.zip
md5:48bc2565b401f7a5e01c5764179212fb
86.0 MB Download
MRC-8spoke.zip
md5:2ac97f1a4734e25956e43bb8e94fbee8
230.6 MB Download
npc2018-master.zip
md5:b28b8dfede845873f3eb06dcef0047df
325.1 MB Download
pom152.zip
md5:91802301666f51ff7ae90c966001d04e
94.0 MB Download
SAXS.zip
md5:bc22b48dffee4c1c7ad09a0665340c66
161.0 kB Download
scaffold-1spoke.dcd
md5:7b0e83eb625427b6db62b3bce2aeb73b
1.9 GB Download
template.zip
md5:ea9ef5c1d3c5240c22ac3e7db939d6c4
1.9 MB Download
validation.zip
md5:6977f44c51b2daa51525fd5ffc542f9f
6.2 MB Download

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